genome.fa.s9352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009352.1 Hibiscus syriacus cultivar Beakdansim tig00113156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624088

Tables:   1   2   

This is table  1  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2608--2645	20	1.9	20	84	10	51	2	10	5	81	0.94
3746--3776	2	15.5	2	100	0	62	48	0	0	51	1.00
5611--5655	19	2.4	19	85	7	56	37	0	8	53	1.32
6657--6690	14	2.3	15	90	10	52	47	2	0	50	1.16
13134--13174	11	3.9	11	78	12	50	68	0	0	31	0.90
13119--13181	20	3.2	20	90	2	92	71	0	0	28	0.86
13124--13176	9	5.6	9	80	12	61	71	0	0	28	0.86
18562--18588	4	6.8	4	100	0	54	51	0	0	48	1.00
22709--22745	15	2.4	15	95	4	65	51	5	0	43	1.24
24940--24986	17	2.8	17	75	12	51	48	2	0	48	1.13
26316--26393	35	2.2	35	83	0	93	42	20	1	35	1.61
26362--26404	21	2.0	21	100	0	86	46	13	0	39	1.44
27008--27253	130	1.9	128	93	1	420	36	13	14	35	1.84
27852--27911	29	2.1	29	84	6	77	28	10	28	33	1.89
32706--32966	51	5.1	51	82	4	299	27	22	16	33	1.95
32706--32966	105	2.5	102	81	3	299	27	22	16	33	1.95
32706--33010	156	2.0	156	79	5	339	27	22	16	33	1.96
32959--33130	55	3.1	55	91	1	290	26	25	14	33	1.94
37638--37665	8	3.5	8	100	0	56	50	10	0	39	1.37
48141--48181	3	14.0	3	94	5	75	65	0	0	34	0.93
61421--61504	45	1.9	44	88	7	127	28	16	16	38	1.91
62338--62390	2	26.5	2	100	0	106	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67231--67313	37	2.3	33	77	18	103	27	6	8	57	1.52
100578--100623	22	2.1	22	88	8	67	65	0	0	34	0.93
114610--114671	32	1.9	32	90	0	97	30	19	16	33	1.94
118443--118488	21	2.1	22	84	11	60	30	21	21	26	1.99
122061--122171	58	1.9	58	85	3	152	31	22	4	41	1.74
128868--129451	291	2.0	292	99	0	1161	29	21	21	27	1.99
144078--144114	20	1.9	19	89	10	58	45	5	24	24	1.74
144261--144334	37	2.0	36	84	7	96	48	4	1	45	1.29
149671--149707	2	19.0	2	94	5	67	51	0	0	48	1.00
160328--160375	2	24.0	2	95	0	87	50	0	2	47	1.12
160514--160559	2	23.0	2	100	0	92	50	0	0	50	1.00
160184--160559	191	2.0	191	96	3	699	39	11	13	35	1.80
165736--165764	2	14.5	2	100	0	58	51	0	0	48	1.00
167632--167657	2	13.0	2	100	0	52	50	0	0	50	1.00
169986--170027	16	2.6	17	81	11	52	69	0	0	30	0.89
170792--170835	23	1.9	23	85	0	61	56	13	18	11	1.66
174575--174617	23	1.9	23	85	4	61	53	0	0	46	1.00
180841--180894	22	2.3	23	81	15	65	50	1	12	35	1.52
180855--180897	22	2.0	22	95	0	77	55	0	16	27	1.41
185706--185743	14	2.8	14	84	4	51	39	26	0	34	1.57
186946--186989	23	1.9	23	95	0	79	9	9	25	56	1.59
187935--187995	20	3.1	19	73	19	54	65	3	1	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190189--190217	6	4.8	6	100	0	58	51	13	0	34	1.42
221479--221533	24	2.3	24	78	6	58	23	27	32	16	1.96
225443--225505	31	2.0	32	87	3	92	34	4	6	53	1.47
227329--227405	31	2.5	31	83	10	95	45	3	3	46	1.39
241698--241744	23	2.1	22	84	4	58	51	2	0	46	1.13
242874--242938	25	2.5	26	80	5	78	35	3	4	56	1.35
242900--242948	24	2.0	25	84	11	66	34	6	4	55	1.44
243367--243398	2	16.0	2	100	0	64	50	0	0	50	1.00
244909--244953	23	2.0	23	81	0	54	42	2	6	48	1.41
245023--245095	17	4.7	15	72	18	53	49	4	1	45	1.29
245029--245102	26	3.0	24	73	19	73	48	6	1	43	1.38
246734--246760	5	5.4	5	100	0	54	59	0	0	40	0.98
253200--253252	17	3.1	16	84	10	61	43	5	7	43	1.56
253226--253283	25	2.3	25	100	0	116	41	3	6	48	1.47
253276--253312	16	2.4	16	86	4	58	40	2	5	51	1.39
255381--255433	21	2.5	21	90	0	88	39	26	9	24	1.86
258054--258086	16	2.1	16	100	0	66	36	12	18	33	1.88
260970--261016	22	2.2	21	77	7	51	40	2	4	53	1.32
263330--263375	20	2.3	20	78	14	51	39	4	6	50	1.48
275345--275390	23	2.0	22	91	4	74	19	2	26	52	1.58
277429--277471	21	2.0	21	95	0	77	39	11	13	34	1.82
278356--278499	57	2.5	58	84	4	195	42	6	17	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280942--280980	16	2.5	15	84	8	51	35	7	23	33	1.83
284329--284376	4	12.0	4	100	0	96	0	25	0	75	0.81
288545--288596	20	2.6	20	100	0	104	46	11	0	42	1.40
291726--291770	20	2.2	20	92	0	72	37	11	24	26	1.89
312012--312052	18	2.2	19	83	12	50	9	12	0	78	0.98
321820--321853	17	2.0	17	100	0	68	11	29	11	47	1.76
326914--326949	15	2.3	16	85	9	56	47	0	0	52	1.00
328278--328320	23	1.9	22	85	4	59	65	2	2	30	1.18
331768--332296	264	2.0	264	98	0	1031	33	16	16	33	1.92
345126--345192	14	4.4	14	75	17	62	14	26	37	20	1.92
345134--345216	19	4.6	19	82	14	104	16	27	36	19	1.93
345126--345210	33	2.6	33	94	0	143	15	27	36	21	1.93
345153--345192	14	2.9	14	96	0	71	15	27	37	20	1.92
346365--346399	18	1.9	18	88	0	52	54	0	17	28	1.43
350113--350179	14	4.4	14	75	17	62	14	26	37	20	1.92
350121--350203	19	4.6	19	82	14	104	16	27	36	19	1.93
350113--350197	33	2.6	33	94	0	143	15	27	36	21	1.93
350140--350179	14	2.9	14	96	0	71	15	27	37	20	1.92
354907--354988	19	4.6	19	79	17	95	17	28	36	18	1.93
354926--354964	13	2.9	14	92	3	62	15	28	38	17	1.91
354899--354982	32	2.6	33	90	3	134	15	27	36	20	1.93
354899--354964	14	4.4	14	73	17	53	15	27	37	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355133--355198	33	2.0	34	82	8	82	27	25	16	30	1.97
360503--360546	22	1.9	24	81	9	56	43	4	2	50	1.35
364836--364896	22	2.8	22	100	0	122	22	13	27	36	1.92
366362--366405	11	4.1	11	82	2	54	70	4	11	13	1.31
381583--381627	24	2.0	23	83	16	58	42	20	20	17	1.90
386876--386905	15	2.0	15	100	0	60	26	20	26	26	1.99
390398--390442	21	2.1	21	87	0	63	48	4	13	33	1.62
391051--391096	23	2.0	23	86	0	65	56	4	2	36	1.31
391070--391104	17	2.1	17	89	5	54	57	0	5	37	1.23
391938--391968	15	2.1	15	94	5	55	74	0	25	0	0.82
391935--391968	14	2.5	13	86	13	50	73	0	26	0	0.83
393762--393807	20	2.3	20	84	0	56	50	8	10	30	1.68
394274--394303	2	15.0	2	100	0	60	50	0	0	50	1.00
413081--414447	217	6.4	213	76	9	1076	31	21	16	30	1.95
413431--413826	204	1.9	203	81	7	480	33	20	15	30	1.94
413631--414447	216	3.8	213	77	6	693	32	21	15	30	1.94
418993--419029	16	2.2	18	85	9	51	27	0	0	72	0.84
421128--421641	257	2.0	257	99	0	1012	29	14	25	30	1.95
427269--427312	21	2.2	20	87	4	61	31	27	25	15	1.96
428290--428399	31	3.6	30	95	1	184	19	20	21	39	1.93
428289--428412	62	2.0	61	90	4	196	20	19	22	37	1.94
432234--432327	47	2.0	49	95	4	174	32	18	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433361--433419	23	2.7	23	84	10	79	25	33	22	18	1.96
435378--435451	23	3.2	23	77	17	64	16	1	27	55	1.49
436234--436358	61	2.0	61	100	0	250	26	24	12	36	1.92
437338--437393	7	8.3	7	82	5	53	26	0	26	46	1.53
437342--437393	20	2.5	20	84	3	68	25	0	26	48	1.52
437446--437492	14	3.4	14	75	19	53	25	0	23	51	1.49
449910--449936	10	2.7	10	100	0	54	7	25	22	44	1.79
452431--452481	25	2.0	25	96	0	93	13	19	7	58	1.59
463321--463351	12	2.6	12	94	0	53	48	0	0	51	1.00
464781--464821	22	1.9	21	90	5	64	70	4	0	24	1.06

Tables:   1   2