genome.fa.s9352.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009352.1 Hibiscus syriacus cultivar Beakdansim tig00113156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624088

Tables:   1   2   

This is table  2  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466076--466109	17	2.0	17	88	0	50	52	5	2	38	1.41
466671--466759	3	29.7	3	97	0	169	1	32	0	66	0.99
468526--468558	15	2.2	15	89	10	50	57	21	0	21	1.41
473578--473602	2	12.5	2	100	0	50	48	0	0	52	1.00
491049--491078	3	10.0	3	100	0	60	66	0	0	33	0.92
491313--491828	260	2.0	258	95	4	932	35	5	15	43	1.70
497280--497312	17	1.9	17	88	11	50	33	3	0	63	1.10
498223--498296	37	2.0	37	81	5	87	35	36	4	24	1.74
499082--499142	31	2.0	31	83	6	79	26	21	11	40	1.87
503407--503454	24	2.0	24	100	0	96	29	12	12	45	1.78
503522--503645	14	8.2	15	73	19	89	47	0	2	50	1.14
503522--503595	28	2.5	28	89	8	103	50	0	0	50	1.00
503648--503686	21	1.9	21	94	5	71	38	0	10	51	1.36
503602--503732	51	2.7	49	83	10	162	37	0	11	51	1.38
503689--503735	21	2.3	20	85	7	60	34	0	14	51	1.43
503757--503830	39	1.9	39	94	2	132	33	0	9	56	1.31
503814--503856	22	2.0	22	100	0	86	39	0	9	51	1.34
503836--503982	78	1.9	79	92	4	253	35	0	14	49	1.48
503945--503987	22	2.0	22	100	0	86	34	0	13	51	1.42
503967--504159	32	6.7	32	74	24	221	34	0	12	52	1.40
503915--504257	54	6.3	54	80	12	407	35	0	11	52	1.41
503999--504041	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503967--504365	86	4.9	82	78	13	387	34	0	11	53	1.39
504053--504095	22	2.0	22	100	0	86	34	0	13	51	1.42
504084--504217	14	8.5	15	65	20	51	35	0	7	55	1.33
504162--504240	31	2.5	32	93	2	133	35	1	8	54	1.40
504020--504365	81	4.3	81	84	8	456	34	0	10	54	1.38
504322--504416	32	3.3	32	69	27	102	33	0	10	55	1.34
504345--504387	22	2.0	22	100	0	86	34	0	13	51	1.42
503792--504451	54	12.4	54	78	10	372	35	0	11	52	1.41
504197--504441	125	1.9	124	82	8	298	35	0	10	53	1.41
504465--504524	31	1.9	31	89	0	93	45	10	5	40	1.60
506702--506995	119	2.5	118	82	4	333	30	14	8	46	1.73
512650--512752	29	3.5	29	67	15	84	34	10	18	35	1.86
515151--515183	9	3.8	9	92	4	50	81	0	0	18	0.68
515333--515362	2	15.0	2	100	0	60	50	0	0	50	1.00
520884--520927	21	2.1	21	86	0	61	31	2	27	38	1.69
524068--524207	33	4.2	33	98	0	253	19	40	14	26	1.90
536020--536045	13	2.0	13	100	0	52	46	7	7	38	1.61
536516--536541	2	13.0	2	100	0	52	50	0	0	50	1.00
541809--541890	19	4.6	19	78	18	95	46	4	3	45	1.42
541809--541882	32	2.3	32	92	2	121	45	5	4	44	1.45
541860--541905	2	24.5	2	79	20	55	47	2	0	50	1.13
546688--546756	33	2.1	33	97	0	129	39	2	10	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554449--554516	3	22.7	3	100	0	136	0	33	0	66	0.92
557369--557420	16	3.2	17	78	7	56	67	3	1	26	1.18
557400--557424	5	5.0	5	100	0	50	80	0	0	20	0.72
559868--559908	20	2.0	20	100	0	82	41	4	39	14	1.67
563280--563339	31	2.0	30	86	3	84	25	18	8	48	1.75
563381--563478	27	3.6	27	95	1	169	43	0	12	43	1.41
564760--564820	27	2.2	28	88	8	99	39	18	8	34	1.80
578849--578898	20	2.4	21	84	15	61	68	12	8	12	1.40
589433--589464	2	16.5	2	93	6	57	50	0	0	50	1.00
590070--590099	2	15.5	2	93	6	53	50	0	0	50	1.00
590284--590370	39	2.2	39	76	9	88	57	1	5	35	1.30
596617--596648	11	2.6	13	90	9	50	84	9	6	0	0.78
597288--597347	30	2.0	30	93	0	102	23	11	8	56	1.61
599355--599400	24	2.0	23	87	8	67	45	0	8	45	1.34
599360--599408	22	2.1	23	85	7	64	42	0	10	46	1.37
602899--602955	21	2.7	21	81	13	64	40	5	3	50	1.42
610063--610211	67	2.2	67	92	1	246	28	28	25	17	1.97
610175--610212	20	1.9	20	88	0	58	23	34	31	10	1.89
610513--610584	29	2.5	29	90	0	108	38	9	13	37	1.78
610598--610674	30	2.5	30	91	2	118	40	5	23	31	1.76
610889--610951	13	5.5	13	65	27	52	19	26	26	26	1.99
610885--610965	22	3.6	22	96	1	144	18	27	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617000--617042	21	2.0	21	86	0	59	30	27	25	16	1.97
617022--617170	66	2.3	67	91	2	239	28	28	25	17	1.97
617134--617171	20	1.9	20	88	0	58	23	34	31	10	1.89
617472--617543	29	2.5	29	90	0	108	38	9	13	37	1.78
617557--617633	30	2.5	30	91	2	118	40	5	23	31	1.76
617848--617910	13	5.5	13	65	27	52	19	26	26	26	1.99
617844--617924	22	3.6	22	96	1	144	18	27	29	24	1.98
619525--619583	29	2.0	29	100	0	118	49	13	13	23	1.78

Tables:   1   2

The End!