genome.fa.s9375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009375.1 Hibiscus syriacus cultivar Beakdansim tig00113246_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74653

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--137	33	2.2	33	92	0	115	11	22	18	47	1.80
257--311	14	3.6	14	73	21	56	40	23	27	9	1.85
257--327	33	2.2	33	92	0	115	42	25	23	8	1.82
323--420	19	5.7	19	70	22	81	10	24	22	42	1.84
345--433	14	5.7	14	73	24	72	8	25	23	41	1.83
328--441	33	3.5	33	93	1	203	9	24	21	44	1.82
2129--2588	183	2.6	179	94	4	797	22	12	19	45	1.83
2129--2588	90	5.1	93	94	5	813	22	12	19	45	1.83
2632--2758	18	7.3	19	69	23	82	44	26	18	10	1.81
2666--2758	33	2.9	32	87	6	134	45	25	19	9	1.81
2775--2831	14	3.7	14	77	20	60	10	21	22	45	1.82
2759--2850	33	2.8	33	93	1	159	10	20	21	46	1.81
2754--2871	19	6.8	19	74	19	114	10	20	22	46	1.80
4685--4757	38	1.9	38	97	0	137	28	1	16	53	1.51
4681--4744	19	3.4	19	64	10	51	25	1	15	57	1.47
4739--4774	14	2.6	14	95	0	63	33	0	22	44	1.53
4887--4988	19	5.6	19	84	13	151	44	17	23	14	1.86
5017--5322	19	17.4	19	78	18	342	14	20	17	47	1.83
5017--5294	52	5.2	52	88	7	327	15	20	16	47	1.83
4985--5322	142	2.4	138	88	8	506	15	20	18	46	1.84
7625--7649	12	2.1	12	100	0	50	0	28	0	72	0.86
7824--7870	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8543--8911	20	18.5	20	86	4	458	20	18	26	34	1.96
14305--14413	34	3.2	34	94	1	182	50	4	12	32	1.61
16472--16513	22	2.0	21	90	4	66	50	2	2	45	1.27
16472--16521	21	2.3	22	86	3	66	48	4	4	44	1.40
28885--28930	14	3.3	14	93	0	83	47	28	15	8	1.74
32297--32350	22	2.4	23	78	12	67	42	3	12	40	1.61
37353--37382	14	2.1	14	93	0	51	30	0	10	60	1.30
37498--37597	33	3.0	34	83	2	139	39	3	4	54	1.35
38116--38209	21	4.5	21	92	5	129	20	26	35	18	1.95
39997--40043	19	2.6	18	76	6	51	55	2	0	42	1.12
39978--40061	34	2.4	35	82	11	102	58	2	0	39	1.11
65298--66597	106	12.3	106	94	0	2117	33	25	18	22	1.97
74007--74058	25	2.1	25	100	0	104	38	7	19	34	1.80

Tables:   1

The End!