genome.fa.s9406.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009406.1 Hibiscus syriacus cultivar Beakdansim tig00113338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  689325

Tables:   1   2   3   

This is table  3  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538579--538624	19	2.4	20	79	17	53	26	2	4	67	1.21
540202--540315	39	2.9	39	92	2	176	33	22	23	20	1.97
541366--541420	28	2.0	27	92	3	92	43	18	5	32	1.73
545008--545032	10	2.5	10	100	0	50	24	44	24	8	1.80
549524--549559	15	2.3	16	90	4	56	30	2	0	66	1.06
550674--550716	21	2.0	21	91	8	70	23	25	18	32	1.97
564314--564603	145	2.0	142	96	3	537	34	20	22	22	1.97
566490--566514	5	5.0	5	100	0	50	0	0	80	20	0.72
566894--566967	17	4.5	16	75	10	69	32	0	1	66	1.00
566875--566956	16	5.3	16	69	16	57	35	0	1	63	1.02
567173--567209	20	2.0	20	84	10	51	35	5	0	59	1.20
570036--570081	18	2.7	18	74	12	53	69	4	0	26	1.07
571208--571249	12	3.9	11	78	15	52	54	0	0	45	0.99
571204--571249	20	2.3	20	89	10	69	56	0	0	43	0.99
571201--571249	25	2.0	24	84	15	64	57	0	0	42	0.99
571725--572391	105	6.3	105	95	0	1149	22	19	25	33	1.97
572608--572636	1	29.0	1	100	0	58	0	0	0	100	0.00
573207--573237	1	31.0	1	100	0	62	0	0	0	100	0.00
584986--585027	12	3.9	11	78	15	52	54	0	0	45	0.99
584982--585027	20	2.3	20	89	10	69	56	0	0	43	0.99
584979--585027	25	2.0	24	84	15	64	57	0	0	42	0.99
587694--587737	19	2.3	19	92	0	70	29	18	31	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588489--588526	20	1.9	20	88	0	58	23	15	28	31	1.96
591147--591202	21	2.7	21	97	0	103	53	7	8	30	1.59
594671--594720	19	2.6	19	87	0	73	32	14	34	20	1.92
595208--595265	24	2.5	21	75	25	55	39	5	22	32	1.76
595486--595558	18	3.9	18	82	7	101	19	20	31	28	1.97
608708--608818	20	5.4	21	71	9	86	32	22	11	33	1.90
608812--608867	20	2.8	20	97	0	103	26	32	16	25	1.96
608879--608958	27	3.0	27	78	5	92	30	16	27	26	1.97
608925--608968	20	2.2	20	87	0	61	29	18	27	25	1.98
609278--609308	2	15.5	2	100	0	62	51	0	0	48	1.00
618338--618377	19	2.1	19	85	4	53	30	2	7	60	1.38
622856--622923	31	2.2	31	83	2	82	33	8	5	51	1.57
623104--623138	17	2.2	16	90	10	54	71	0	5	22	1.07
629873--629910	20	1.9	20	94	0	67	34	21	10	34	1.87
639436--639460	12	2.1	12	100	0	50	0	16	52	32	1.44
639432--639466	16	2.2	16	89	0	52	0	17	51	31	1.45
639874--639923	5	10.0	5	93	6	84	40	40	20	0	1.52
640355--640435	6	13.5	6	100	0	162	0	16	50	33	1.45
641788--641820	16	2.1	16	100	0	66	30	18	30	21	1.97
649788--649826	21	1.9	21	84	5	53	58	0	0	41	0.98
652552--652626	30	2.5	30	84	4	89	42	5	8	44	1.56
652792--652832	16	2.6	16	77	14	50	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661558--661663	50	2.1	50	100	0	212	34	14	19	31	1.92
665853--666010	21	7.8	20	72	7	86	38	25	17	18	1.92
665977--666170	20	9.6	20	80	5	212	35	25	19	19	1.95
665977--666170	60	3.2	60	81	3	237	35	25	19	19	1.95
666552--666622	33	2.2	33	92	0	115	11	22	18	47	1.80
666701--666778	41	1.9	41	97	0	147	44	16	25	12	1.83
666702--666777	21	3.7	21	83	3	109	46	17	25	11	1.82
666762--666818	14	3.7	14	75	20	60	42	22	24	10	1.85
666757--666821	33	2.0	33	100	0	130	43	21	24	10	1.84
666760--666834	33	2.3	33	92	0	123	45	24	21	9	1.81
666830--666927	19	5.7	19	70	22	90	10	23	22	43	1.83
666852--666941	14	5.7	14	72	23	72	8	24	23	43	1.82
666835--666949	33	3.5	33	97	0	221	9	23	20	46	1.80
668646--669114	93	5.1	93	98	0	904	21	13	18	46	1.83
669162--669290	19	7.3	19	75	17	125	46	28	16	8	1.76
669198--669290	33	2.8	32	91	4	150	47	27	17	7	1.74
669162--669290	52	2.5	52	72	14	131	46	28	16	8	1.76
669286--669420	19	7.6	19	75	16	128	11	19	23	45	1.82
669308--669364	14	3.7	14	77	20	60	10	21	22	45	1.82
669291--669383	33	2.8	33	95	0	168	10	20	21	47	1.80
671346--671381	14	2.6	14	95	0	63	33	0	22	44	1.53
671488--671585	19	5.4	19	80	15	118	46	17	20	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671488--671603	53	2.2	53	93	4	200	44	18	22	14	1.85
671610--671900	33	8.5	33	72	18	220	13	21	17	46	1.83
671632--671900	19	15.4	19	76	18	282	13	21	17	47	1.82
671610--671872	52	5.0	52	97	0	490	14	22	16	46	1.83
674176--674200	12	2.1	12	100	0	50	0	28	0	72	0.86
675100--675289	20	9.5	20	82	4	195	20	18	25	36	1.95
675276--675358	21	4.0	21	73	6	78	25	16	24	33	1.96
675256--675354	42	2.4	43	77	11	100	21	18	23	37	1.94
679484--679523	20	2.0	20	85	9	55	42	0	12	45	1.42
687492--687516	12	2.1	12	100	0	50	52	0	0	48	1.00
687951--688003	19	2.8	18	77	8	52	43	1	0	54	1.11
687940--687985	25	2.0	24	84	16	62	43	2	0	54	1.12
688440--688519	33	2.4	33	85	2	106	18	23	6	51	1.69

Tables:   1   2   3

The End!