genome.fa.s9406.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009406.1 Hibiscus syriacus cultivar Beakdansim tig00113338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  689325

Tables:   1   2   3   

This is table  2  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193868--193910	18	2.3	18	88	4	59	13	2	6	76	1.08
193719--193925	102	2.1	99	84	12	268	38	4	8	48	1.54
214848--214908	31	2.0	31	96	0	113	34	6	27	31	1.83
219517--219709	105	1.9	100	84	9	255	47	8	10	33	1.69
219970--220095	51	2.5	49	87	5	171	18	29	35	16	1.93
223876--223962	9	9.3	9	72	12	68	18	25	29	26	1.98
223875--223962	18	4.7	19	83	12	85	19	25	29	26	1.98
223875--223962	37	2.3	39	83	11	112	19	25	29	26	1.98
223956--224065	33	3.2	33	78	14	116	16	38	26	19	1.92
224002--224104	7	14.4	7	77	18	106	15	32	29	23	1.95
224002--224100	13	7.5	13	79	16	114	15	32	29	23	1.95
223973--224086	53	2.2	51	87	9	174	15	35	28	20	1.93
223989--224095	53	2.0	53	100	0	214	14	33	28	22	1.94
231234--231321	10	9.1	10	74	12	85	19	23	29	27	1.98
231234--231323	19	4.7	20	87	6	123	18	25	28	26	1.98
231317--231374	17	3.4	17	97	0	107	17	43	24	15	1.87
231364--231414	7	7.4	7	95	4	95	15	29	29	25	1.96
236660--236684	13	1.9	13	100	0	50	0	20	0	80	0.72
237652--237704	22	2.4	22	87	6	72	24	28	20	26	1.99
269284--269336	22	2.4	23	81	6	65	58	0	1	39	1.09
278496--278572	31	2.5	31	91	6	129	57	6	14	22	1.60
281648--281681	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283228--283299	26	2.7	26	95	2	126	37	2	13	45	1.59
291090--291189	51	2.0	51	84	4	130	17	30	32	21	1.95
292889--293027	64	2.2	64	81	5	156	33	21	17	27	1.96
293601--293673	18	3.9	18	78	7	74	20	17	30	31	1.96
293924--293954	2	15.5	2	93	0	53	45	0	0	54	0.99
296211--296266	25	2.2	26	80	3	69	66	3	0	30	1.09
304808--304846	20	2.0	20	94	0	69	56	15	10	17	1.66
304978--305088	42	2.6	42	84	2	125	27	7	17	48	1.73
321590--321663	23	3.2	23	80	5	87	62	24	8	5	1.44
326333--326427	29	3.2	31	81	7	101	65	0	0	34	0.93
326323--326405	29	2.7	30	80	12	89	59	0	1	39	1.05
326356--326457	7	13.4	8	73	20	60	63	0	0	35	1.01
326357--326429	14	5.1	15	76	12	73	68	0	0	31	0.90
326365--326436	15	4.8	15	74	10	67	68	0	1	30	0.99
326856--326880	2	12.5	2	100	0	50	48	0	0	52	1.00
332148--332197	19	2.6	19	96	0	91	46	0	2	52	1.12
334429--334595	81	2.0	85	91	8	281	35	13	8	42	1.75
337758--337798	18	2.2	19	83	12	50	41	0	41	17	1.49
346598--346652	17	3.1	17	73	14	56	29	0	1	69	0.99
346818--346874	17	3.2	18	75	20	57	54	5	1	38	1.33
348218--348264	17	2.7	17	96	3	85	42	19	10	27	1.84
358994--359369	187	2.0	187	97	0	707	32	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361464--361493	16	1.9	15	93	6	51	23	16	53	6	1.66
378746--378773	6	4.7	6	100	0	56	14	32	0	53	1.41
378773--378799	4	6.8	4	100	0	54	22	0	0	77	0.76
380291--380415	50	2.5	48	78	6	124	16	33	27	22	1.96
380536--380596	10	6.1	10	83	14	81	31	27	0	40	1.57
380540--380595	20	2.8	20	97	0	103	28	26	0	44	1.54
380720--380941	111	2.0	111	94	0	390	36	8	10	44	1.70
382454--382503	18	2.8	18	93	0	91	30	22	18	30	1.97
392961--393003	20	2.2	20	83	8	52	16	13	2	67	1.33
398670--398782	50	2.3	50	88	0	163	26	29	30	13	1.94
403762--403844	30	2.8	29	83	9	87	44	15	7	32	1.74
418770--419422	355	1.9	343	89	6	1023	44	9	8	37	1.67
420422--420488	22	3.0	22	95	2	116	25	28	26	19	1.99
422182--422226	21	2.1	21	87	0	63	15	24	28	31	1.96
424084--424158	35	2.1	35	92	0	123	33	29	28	9	1.88
424235--424309	24	3.2	24	88	1	116	36	21	17	25	1.95
424239--424315	23	3.3	23	85	3	109	36	20	18	24	1.95
424218--424331	47	2.4	47	79	5	124	40	19	14	25	1.90
425469--425504	18	2.0	18	88	0	54	30	16	0	52	1.44
426798--426836	7	5.4	7	93	6	69	25	28	33	12	1.93
426839--426887	13	3.8	13	91	0	80	16	18	46	18	1.84
426826--426861	18	2.0	18	94	0	63	11	22	47	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428925--428999	35	2.1	35	92	0	123	33	29	28	9	1.88
429076--429150	24	3.2	24	88	1	116	36	21	17	25	1.95
429080--429156	23	3.3	23	85	3	109	36	20	18	24	1.95
429059--429172	47	2.4	47	79	5	124	40	19	14	25	1.90
430310--430345	18	2.0	18	88	0	54	30	16	0	52	1.44
431639--431678	7	5.4	7	88	11	62	25	27	35	12	1.92
431640--431678	15	2.6	15	100	0	78	25	25	35	12	1.92
431681--431729	13	3.8	13	91	0	80	16	18	46	18	1.84
431668--431703	18	2.0	18	94	0	63	11	22	47	19	1.80
431640--431681	8	5.5	8	91	8	70	23	26	35	14	1.93
434435--434501	22	3.0	22	95	2	116	25	28	26	19	1.99
436190--436234	21	2.1	21	87	0	63	15	24	28	31	1.96
438979--439021	20	2.0	20	86	8	59	39	0	25	34	1.56
440708--440772	18	3.6	18	74	12	60	23	20	26	30	1.98
440698--440752	18	2.9	19	78	8	58	21	21	25	30	1.98
440698--440773	37	2.0	38	87	2	109	23	19	26	30	1.98
441121--441159	4	9.5	4	94	5	69	25	0	25	48	1.51
454429--454471	20	2.2	20	87	4	61	39	2	25	32	1.69
455264--455309	21	2.2	21	96	0	83	50	10	17	21	1.77
461253--462053	399	2.0	399	98	0	1530	29	12	17	39	1.87
466497--466602	55	2.0	53	87	7	151	44	10	21	23	1.83
467285--467422	71	1.9	72	94	1	242	35	13	27	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470815--471045	124	1.9	124	84	0	309	32	16	26	24	1.96
470815--471062	125	2.0	124	83	0	307	33	15	26	25	1.95
472265--472367	37	2.8	36	78	11	120	33	22	19	24	1.97
472733--473044	51	5.9	52	79	10	257	30	15	23	31	1.95
472742--472943	104	2.0	101	83	7	255	30	16	24	28	1.97
472754--473046	55	5.5	56	79	10	217	30	15	23	30	1.95
472742--473044	111	2.9	104	79	11	314	30	15	23	30	1.95
483656--483690	17	2.0	18	88	5	54	51	0	2	45	1.16
498599--499621	363	2.8	364	94	0	1800	27	16	12	42	1.85
498599--499621	182	5.6	182	94	0	1773	27	16	12	42	1.85
501958--502004	20	2.4	19	79	10	58	19	17	8	55	1.67
501925--502398	182	2.6	181	89	0	705	26	16	13	43	1.85
508021--508057	17	2.2	17	86	13	51	54	0	5	40	1.24
508076--508107	17	1.9	17	93	6	57	34	0	0	65	0.93
508312--508360	20	2.5	20	93	0	80	34	18	6	40	1.75
508625--508649	13	1.9	13	100	0	50	68	0	0	32	0.90
508983--509028	15	3.1	15	79	17	51	34	2	4	58	1.30
510133--510158	12	2.2	12	100	0	52	38	0	0	61	0.96
511183--511302	64	1.9	64	89	0	186	44	12	11	31	1.78
511341--511824	198	2.4	196	78	10	490	30	15	14	39	1.88
512642--513153	182	2.8	182	91	2	814	29	16	11	42	1.84
513449--513643	56	3.5	55	77	5	196	38	12	16	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514121--514167	20	2.3	21	79	17	55	44	6	0	48	1.28
517708--517788	28	2.9	28	94	0	144	32	22	1	44	1.61
520171--520212	16	2.5	17	81	11	52	52	4	2	40	1.35
524695--525144	224	2.0	225	99	0	893	21	18	21	38	1.93
525825--525912	28	2.9	30	75	16	101	25	17	10	47	1.78
530561--530678	29	4.0	29	83	5	155	13	35	8	42	1.75
530564--530678	61	1.9	60	92	1	194	13	34	8	42	1.76
538366--538414	20	2.4	21	80	10	57	44	4	6	44	1.47
538443--538527	31	2.7	31	76	5	91	47	3	3	45	1.37
538506--538546	19	2.1	20	86	13	59	48	0	4	46	1.23

Tables:   1   2   3