Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009407.1 Hibiscus syriacus cultivar Beakdansim tig00113339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77292

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--8209
7
1195.0
7
95
3
12023
31
44
12
12
1.78
14366--14402
19
1.9
19
88
0
56
29
40
16
13
1.86
14497--14561
25
2.6
25
85
4
69
61
0
0
38
0.96
14484--14550
34
2.0
34
96
0
125
59
0
0
40
0.97
14514--14562
25
2.0
25
95
0
89
59
0
0
40
0.98
16353--16381
2
14.5
2
100
0
58
48
0
0
51
1.00
15942--16569
315
2.0
309
98
1
1202
29
18
13
38
1.89
31178--31294
36
3.2
36
92
0
198
35
7
36
19
1.81
35591--35651
21
2.9
21
85
0
77
26
14
22
36
1.93
37313--37369
21
2.5
22
84
15
80
43
5
0
50
1.24
37313--37372
25
2.6
23
89
10
88
43
5
0
51
1.23
37386--37427
19
2.2
20
87
12
61
42
2
2
52
1.27
48792--48840
24
2.0
24
96
0
89
12
24
8
55
1.64
48798--48850
24
2.2
24
89
0
79
13
16
11
58
1.63
51414--51444
1
31.0
1
100
0
62
0
0
0
100
0.00
69730--69797
16
4.4
16
72
20
54
47
2
2
47
1.32
69738--69782
18
2.7
18
90
10
69
48
0
4
46
1.22
69738--69805
18
3.9
17
80
16
68
47
1
2
48
1.26
69739--69807
19
3.7
19
76
16
74
47
1
2
47
1.25
72121--72164
21
2.2
20
87
4
61
47
2
2
47
1.27

Tables:   1

The End!