Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009415.1 Hibiscus syriacus cultivar Beakdansim tig00113365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54987

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1398--1454
28
2.0
28
89
0
87
29
19
21
29
1.97
9877--9951
39
1.9
39
86
5
107
49
16
18
16
1.80
11100--11200
3
34.3
3
96
4
188
67
0
0
32
0.91
11538--11676
40
3.4
39
72
16
120
22
17
34
25
1.95
11493--11673
83
2.2
82
89
2
272
23
17
32
26
1.97
11488--11779
43
6.8
44
69
14
171
23
18
30
27
1.98
11800--11945
66
2.2
65
87
6
206
42
15
21
20
1.89
12001--12128
36
3.6
35
82
8
143
36
12
17
33
1.87
13460--13518
2
29.5
2
100
0
118
49
0
0
50
1.00
17579--17816
4
59.5
4
100
0
476
50
24
0
25
1.50
19417--19460
3
14.3
3
90
4
70
65
2
0
31
1.05
21300--21365
31
2.1
31
85
0
87
21
9
15
54
1.68
22763--22974
100
2.1
102
93
1
365
49
4
7
39
1.51
24922--24946
7
3.6
7
100
0
50
12
28
48
12
1.76
28521--28568
21
2.3
21
92
0
78
41
10
18
29
1.84
32901--32948
21
2.3
21
92
0
78
41
12
16
29
1.85
41155--41196
16
2.5
17
80
11
50
23
2
9
64
1.35
41796--41902
47
2.3
46
81
7
121
48
10
4
36
1.58
41888--41933
2
23.5
2
95
4
85
50
0
0
50
1.00
41951--46170
4
1065.5
4
97
2
7979
49
25
0
25
1.51
50375--50430
28
2.0
28
100
0
112
35
10
21
32
1.88
50841--50874
17
2.1
16
88
5
50
76
0
8
14
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51349--51395
24
2.0
24
83
8
60
57
12
2
27
1.47
54694--54740
18
2.6
19
73
13
53
61
0
19
19
1.34

Tables:   1

The End!