Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009437.1 Hibiscus syriacus cultivar Beakdansim tig00113495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  392309

Tables:   1   2   

This is table  2  of  2  ( 185 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
258489--258549
6
10.0
6
98
1
113
50
16
0
32
1.45
260810--260856
4
11.8
4
100
0
94
0
25
23
51
1.49
260854--263992
4
791.0
4
97
2
5996
25
24
0
49
1.51
265555--265611
18
3.4
17
80
7
62
17
10
43
28
1.82
265924--265999
28
2.7
27
74
10
73
56
1
0
42
1.07
265972--266003
15
2.2
15
94
5
57
50
0
0
50
1.00
267948--267979
16
2.0
16
100
0
64
56
25
12
6
1.59
268044--268118
10
7.7
10
67
21
52
58
21
10
9
1.59
268051--268117
16
4.2
16
90
0
98
59
22
8
8
1.55
268048--268112
32
2.0
32
93
0
112
58
23
10
7
1.57
269627--269688
24
2.6
24
86
0
88
53
22
11
12
1.71
275092--275147
27
2.1
27
100
0
112
26
32
10
30
1.90
278185--278390
68
3.0
68
83
0
268
30
16
23
29
1.96
278423--278594
45
3.8
45
86
1
220
50
7
19
22
1.73
278479--278549
22
3.2
22
70
18
65
49
8
23
18
1.75
278455--278523
24
3.0
24
70
20
65
50
4
21
23
1.66
278426--278728
90
3.4
89
84
2
322
45
9
21
23
1.81
278480--278880
45
8.9
45
83
2
412
40
11
23
25
1.87
284654--284862
45
4.6
45
87
3
278
27
23
11
37
1.89
284592--284862
90
3.0
90
84
2
312
28
22
10
38
1.87
292119--292234
19
5.5
21
68
17
62
51
0
0
46
1.12
292145--292234
42
2.2
42
86
6
121
51
1
1
46
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
292326--292387
27
2.2
28
81
16
67
53
0
0
46
1.00
292383--292439
27
2.0
26
83
12
69
50
1
5
42
1.35
293218--293295
39
2.0
38
81
16
90
70
1
5
23
1.14
293461--293504
2
22.5
2
95
4
81
52
0
0
47
1.00
296522--296581
24
2.5
24
97
2
113
31
21
15
31
1.94
302840--302880
21
2.0
21
95
0
73
31
14
7
46
1.72
302875--302973
33
3.0
33
94
1
164
32
7
15
45
1.73
304075--304130
15
3.7
15
70
13
51
39
10
7
42
1.67
304218--304257
19
2.0
21
90
9
66
37
22
25
15
1.93
305286--305322
19
1.9
19
100
0
74
54
21
2
21
1.58
306148--306178
14
2.2
14
100
0
62
25
0
12
61
1.32
306421--306519
28
3.5
28
85
8
121
35
7
4
53
1.47
306760--306849
3
32.3
3
75
18
88
27
3
0
68
1.05
306733--306849
52
2.2
53
92
5
202
26
5
0
68
1.10
306733--306849
61
1.9
61
91
8
193
26
5
0
68
1.10
309499--309531
17
2.1
16
88
11
50
51
6
18
24
1.68
313734--313771
14
2.7
14
87
0
58
7
13
21
57
1.60
327478--327555
39
2.0
39
94
0
138
23
7
12
56
1.62
332394--332443
25
2.0
25
88
3
75
58
0
4
38
1.17
332399--332457
25
2.4
25
83
11
68
62
0
3
33
1.12
336171--336218
21
2.3
21
100
0
96
35
10
14
39
1.80
337270--337426
85
1.8
85
91
0
260
29
20
17
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
343286--343828
60
9.1
60
87
2
716
37
12
23
27
1.90
350133--350239
21
5.0
22
71
13
62
74
1
13
10
1.14
350158--350258
6
16.5
6
70
15
73
75
1
17
4
1.08
350168--350207
15
2.7
15
92
0
71
80
0
15
5
0.88
350153--350260
21
5.3
20
68
16
71
75
1
16
5
1.07
350149--350258
13
9.2
11
71
21
62
75
1
17
5
1.08
353759--353919
40
4.1
40
88
1
243
24
15
25
34
1.95
353763--353919
79
2.0
80
92
1
262
23
15
26
34
1.95
354024--354343
90
3.6
89
88
5
448
40
7
21
30
1.81
354024--354343
46
7.1
45
88
4
450
40
7
21
30
1.81
354763--354820
21
2.8
21
94
2
100
22
36
20
20
1.95
356582--357038
60
7.7
60
88
0
639
36
11
23
27
1.90
365302--365385
3
28.0
3
81
4
98
60
1
2
35
1.17
365578--365675
36
2.7
37
87
6
130
48
5
9
36
1.57
365660--365757
39
2.5
40
79
14
98
43
3
5
47
1.40
365767--365795
10
3.0
10
95
5
51
37
0
0
62
0.96
365791--365840
20
2.6
19
78
9
57
12
14
0
74
1.09
367003--367061
15
4.3
14
71
16
52
23
8
1
66
1.29
376135--376164
3
10.0
3
100
0
60
66
0
0
33
0.92
377855--377903
24
2.0
24
84
7
64
24
2
2
71
1.07
390903--390948
23
2.1
22
84
8
58
2
8
8
80
0.99

Tables:   1   2

The End!