genome.fa.s9448.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009448.1 Hibiscus syriacus cultivar Beakdansim tig00113548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  757038

Tables:   1   2   3   

This is table  3  of  3  ( 318 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569664--569706	21	2.0	22	82	13	54	18	13	16	51	1.77
570490--570516	14	1.9	14	100	0	54	14	11	14	59	1.62
570471--570549	34	2.4	33	82	2	95	12	7	16	63	1.51
572134--572176	14	3.1	14	79	0	50	23	11	4	60	1.50
572195--572250	23	2.3	25	76	17	64	48	8	3	39	1.52
574335--574370	2	18.0	2	100	0	72	50	0	0	50	1.00
574389--574506	23	5.4	22	69	17	77	39	2	2	55	1.27
574880--574923	21	2.1	21	87	8	63	29	18	20	31	1.96
579249--579300	2	26.0	2	88	0	77	44	0	5	50	1.26
579374--579430	29	1.9	30	85	3	80	24	24	5	45	1.74
584957--585013	24	2.4	24	90	0	96	56	17	14	12	1.68
590024--590073	25	2.0	25	100	0	100	44	8	8	40	1.63
604446--604475	2	15.0	2	100	0	60	50	0	0	50	1.00
604699--605186	255	1.9	255	95	0	888	35	14	22	26	1.93
606798--606869	36	2.0	37	83	8	94	29	4	1	65	1.20
607034--607095	24	2.6	25	70	14	58	17	14	1	66	1.34
618312--619152	105	8.0	105	95	1	1438	34	25	18	22	1.96
620544--620582	17	2.3	17	86	0	51	30	0	2	66	1.05
620525--620600	38	2.0	39	84	7	102	30	3	1	64	1.20
620499--620601	44	2.4	42	80	16	106	32	4	0	62	1.23
620751--620811	24	2.5	24	70	19	56	18	14	1	65	1.35
620864--620944	27	3.0	27	74	7	83	27	9	1	61	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621412--621457	2	23.5	2	95	4	85	52	0	0	47	1.00
626315--626490	87	2.0	87	100	0	352	45	11	12	30	1.77
626473--626587	60	1.9	60	82	3	142	38	10	10	40	1.74
627453--627514	29	2.1	29	96	0	115	33	14	17	33	1.90
635938--635976	17	2.3	17	95	0	69	10	30	30	28	1.90
638136--638176	21	2.0	21	85	9	57	63	4	2	29	1.28
641111--641140	13	2.3	13	100	0	60	20	23	16	40	1.91
642458--642509	24	2.2	24	85	0	68	15	19	21	44	1.87
644840--644871	14	2.1	16	88	11	50	18	15	15	50	1.79
645126--645165	14	2.9	14	88	3	64	2	10	27	60	1.42
648243--648330	16	5.4	16	65	15	54	26	25	10	38	1.87
648259--648314	17	3.4	17	76	14	62	28	23	8	39	1.85
648235--648341	33	3.3	33	90	1	171	27	27	8	37	1.85
648579--648604	13	2.0	13	100	0	52	38	0	0	61	0.96
659494--659545	24	2.1	25	86	10	72	51	0	0	48	1.00
659494--659545	13	4.2	12	76	11	52	51	0	0	48	1.00
663045--663074	15	1.9	16	93	6	53	0	3	10	86	0.67
667708--667808	49	2.1	49	92	0	166	29	6	18	44	1.76
667816--667913	31	3.1	31	81	5	108	55	8	1	35	1.37
672868--672902	18	1.9	18	88	0	52	48	0	0	51	1.00
674422--674454	14	2.3	15	89	5	50	60	0	0	39	0.97
675089--675129	10	4.1	10	83	0	55	29	29	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675171--675211	18	2.3	18	91	4	66	29	4	2	63	1.28
677237--677262	12	2.2	12	100	0	52	34	23	34	7	1.83
677392--677463	26	3.0	24	68	27	62	26	6	4	62	1.39
681159--681265	51	2.1	51	82	6	128	24	28	29	16	1.97
681627--681739	60	1.9	59	82	8	140	38	13	1	46	1.53
681916--682071	60	2.6	60	85	5	190	39	2	22	35	1.68
693550--693590	18	2.3	18	86	0	55	46	12	21	19	1.82
700181--700223	15	2.9	15	79	10	52	27	0	4	67	1.10
709909--710007	51	2.0	49	92	7	164	33	18	8	40	1.80
712314--712346	17	1.9	17	93	0	57	66	0	0	33	0.92
713078--713125	21	2.3	20	76	16	53	39	6	0	54	1.26
713835--713888	14	3.4	17	70	17	53	40	0	5	53	1.24
713996--714031	18	2.0	18	88	0	54	61	5	2	30	1.33
714236--714362	61	2.1	61	98	0	245	37	11	6	44	1.65
714243--714339	31	3.2	31	65	24	87	38	9	6	46	1.61
716033--716077	20	2.2	20	84	0	54	37	4	2	55	1.32
716180--716237	29	2.0	29	83	10	73	60	13	6	18	1.55
717386--717429	22	2.0	22	82	4	54	29	2	2	65	1.16
719532--719660	32	4.1	31	84	1	159	28	15	20	34	1.94
719532--719660	63	2.0	62	89	2	195	28	15	20	34	1.94
722466--722517	21	2.5	21	72	12	52	38	1	3	55	1.29
725116--725177	29	2.2	27	80	8	70	27	4	0	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726629--726724	39	2.5	39	86	3	131	18	26	23	31	1.98
728826--728875	25	2.1	24	92	7	84	28	10	16	46	1.78
730244--730278	17	2.1	17	88	0	52	57	0	5	37	1.23
737507--737550	18	2.5	17	85	3	52	47	0	0	52	1.00
738185--738262	23	3.6	23	72	13	83	24	20	19	35	1.95
738151--738246	21	4.6	21	74	14	72	20	20	22	35	1.96
738266--738313	21	2.3	23	86	13	68	43	18	16	20	1.88
738488--738516	11	2.5	12	88	11	51	68	0	0	31	0.89
743771--743802	15	2.1	15	100	0	64	18	25	37	18	1.94
751192--751547	180	2.0	181	84	2	464	20	32	16	31	1.94
753326--753360	2	17.5	2	100	0	70	48	0	0	51	1.00
755568--755615	24	2.0	24	100	0	96	41	4	8	45	1.53

Tables:   1   2   3

The End!