genome.fa.s9454.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009454.1 Hibiscus syriacus cultivar Beakdansim tig00113688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170847

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
876--912	18	2.1	18	100	0	74	5	16	21	56	1.59
6010--6044	17	2.1	17	100	0	70	22	17	11	48	1.79
7255--7316	32	1.9	32	96	0	115	29	9	22	38	1.86
15484--15511	14	2.0	14	100	0	56	71	0	14	14	1.15
15481--15547	17	4.1	17	85	12	86	62	4	13	19	1.47
16075--16114	15	2.8	14	85	14	55	70	0	7	22	1.12
20769--20811	20	2.0	22	91	8	72	44	4	0	51	1.22
23402--23461	18	3.3	18	90	0	93	31	26	13	28	1.94
25839--25907	21	3.3	21	87	2	95	55	8	24	11	1.64
30056--30086	14	2.2	14	100	0	62	51	6	12	29	1.65
30675--30707	16	2.1	16	94	0	57	66	0	6	27	1.15
32918--32957	18	2.2	18	100	0	80	40	0	0	60	0.97
32901--32934	11	3.0	11	91	4	50	26	2	0	70	1.01
32921--32969	25	2.0	25	83	0	62	44	0	0	55	0.99
33367--33406	19	2.1	19	100	0	80	67	10	5	17	1.37
37301--37329	14	2.1	14	100	0	58	41	20	0	37	1.53
38926--38966	20	2.0	20	90	0	64	24	17	19	39	1.92
39661--39698	20	1.9	20	100	0	76	52	21	13	13	1.73
39894--39941	21	2.3	20	86	10	69	14	25	0	60	1.34
39901--39942	21	2.0	22	95	4	77	14	23	0	61	1.32
43258--43312	27	2.0	27	100	0	110	45	7	7	40	1.60
47563--47601	21	1.9	20	94	5	69	33	10	25	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47613--47648	18	2.0	18	100	0	72	22	16	0	61	1.35
47701--47766	32	2.1	32	100	0	132	42	3	18	36	1.66
49316--49341	12	2.2	12	100	0	52	34	0	7	57	1.27
49503--49556	14	4.1	14	75	20	53	53	0	1	44	1.11
49534--49561	14	2.0	14	100	0	56	64	0	7	28	1.20
51991--52019	14	2.1	14	100	0	58	20	6	0	72	1.07
52110--52204	25	2.9	36	68	31	113	55	8	2	33	1.42
55225--55271	23	2.0	23	100	0	94	23	17	17	42	1.88
56490--56523	17	2.0	17	88	0	50	47	11	2	38	1.55
59220--59248	14	2.1	14	100	0	58	27	0	13	58	1.36
61143--61208	8	8.4	8	74	15	50	69	0	3	27	1.03
61144--61202	31	2.0	29	86	6	82	69	0	3	27	1.04
61178--61212	17	2.1	17	100	0	70	77	0	0	22	0.78
61239--61282	18	2.3	19	88	7	63	52	0	0	47	1.00
61238--61279	12	3.5	13	87	12	63	52	0	0	47	1.00
61279--61317	20	2.0	20	95	5	71	51	5	0	43	1.24
61160--61325	17	9.6	17	70	22	55	62	1	1	34	1.14
61324--61369	12	3.7	12	83	11	56	52	0	10	36	1.37
61332--61362	14	2.2	14	100	0	62	51	0	6	41	1.27
61324--61376	26	2.1	24	86	6	70	50	0	9	39	1.35
61319--61375	12	4.4	13	78	12	55	54	0	8	36	1.32
61369--61394	13	2.0	13	100	0	52	38	15	0	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61383--61425	20	2.2	20	100	0	86	46	13	0	39	1.44
61623--61649	13	2.1	13	100	0	54	62	0	22	14	1.31
63916--63973	28	2.1	28	100	0	116	32	15	13	37	1.87
65107--65153	23	2.0	23	95	0	85	44	4	0	51	1.21
65607--65631	13	1.9	13	100	0	50	96	0	4	0	0.24
65772--65806	11	3.1	11	87	4	52	51	2	0	45	1.16
67403--67446	22	2.0	22	100	0	88	45	18	4	31	1.69
68464--68493	14	2.1	15	93	6	53	43	0	6	50	1.28
69030--69070	10	4.0	10	93	3	64	48	17	0	34	1.47
69505--69546	20	2.1	20	100	0	84	19	4	14	61	1.49
69934--69985	22	2.4	22	87	12	88	9	13	3	73	1.23
70459--70502	17	2.5	17	88	7	61	59	0	9	31	1.29
70514--70553	19	2.2	18	90	4	62	37	2	5	55	1.35
70722--70757	12	3.0	12	95	0	63	41	2	16	38	1.63
70771--70807	18	2.1	18	89	0	56	45	2	2	48	1.30
71278--71325	16	3.0	16	71	0	51	10	6	8	75	1.20
71357--71412	11	5.3	11	77	12	55	30	5	0	64	1.16
71365--71412	18	2.9	18	74	25	61	33	4	0	62	1.14
71325--71425	31	3.4	30	76	19	95	32	3	0	62	1.20
71367--71416	15	3.4	14	77	17	57	32	4	0	64	1.12
73035--73090	9	6.0	10	89	10	84	21	14	0	64	1.29
73035--73090	14	4.0	14	95	4	80	21	14	0	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73035--73089	23	2.4	23	100	0	110	21	12	0	65	1.26
75621--75650	15	2.1	15	93	6	53	70	0	10	20	1.16
81355--81397	22	2.0	22	95	0	77	44	6	2	46	1.43
81390--81444	19	2.9	19	89	7	78	41	3	9	45	1.53
81437--81557	11	11.6	11	69	19	57	45	0	0	52	1.12
81483--81559	3	24.3	3	71	19	50	38	1	0	59	1.06
81444--81554	18	5.9	20	75	19	80	45	0	0	52	1.13
81492--81559	28	2.5	28	81	13	79	41	0	0	58	0.98
81469--81589	56	2.3	55	79	9	137	47	0	0	52	1.06
81469--81570	24	4.3	23	75	20	95	44	0	0	54	1.06
81502--81562	21	3.0	21	88	9	92	40	0	0	59	0.98
81428--81592	52	3.2	50	69	18	119	47	0	1	50	1.13
81637--81664	14	2.0	14	100	0	56	42	0	0	57	0.99
85636--85666	13	2.4	13	100	0	62	16	16	12	54	1.71
86504--86558	27	2.0	27	100	0	110	32	14	10	41	1.81
86883--86923	13	3.0	13	86	13	64	39	7	0	53	1.29
86888--86925	15	2.5	15	100	0	76	42	5	0	52	1.24
87096--87137	21	2.0	21	100	0	84	33	0	9	57	1.31
89918--89949	16	2.0	16	100	0	64	25	12	6	56	1.59
91210--91248	19	2.1	19	100	0	78	41	15	15	28	1.87
91276--91305	14	2.1	14	93	0	51	26	10	10	53	1.66
91746--91789	11	3.8	12	88	11	65	34	0	4	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91746--91782	13	3.0	13	92	7	60	37	0	5	56	1.22
96431--96455	11	2.3	11	100	0	50	72	0	16	12	1.13
96558--96601	21	2.1	21	100	0	88	20	4	18	56	1.58
104954--104997	22	2.0	22	100	0	88	31	22	9	36	1.86
106267--106356	24	3.9	24	94	5	152	26	0	4	68	1.08
106496--106544	13	3.5	13	88	8	62	59	2	0	38	1.09
109769--109815	13	4.0	13	74	25	59	46	0	8	44	1.33
109770--109813	21	2.1	21	100	0	88	47	0	9	43	1.35
109769--109837	34	2.0	35	86	8	97	47	0	8	43	1.34
109774--109840	21	3.0	24	82	16	74	49	0	8	41	1.34
109806--109853	22	2.2	22	88	7	71	50	2	6	41	1.39
111691--111731	21	2.0	21	90	0	64	43	7	12	36	1.70
111775--111825	8	6.0	8	78	13	57	43	1	0	54	1.11
111772--111841	16	4.6	16	77	17	69	45	4	0	50	1.21
111792--111832	19	2.2	19	95	0	73	51	0	0	48	1.00
111801--111860	20	3.3	18	81	11	61	53	3	0	43	1.17
111801--111851	17	2.9	17	76	21	52	54	1	0	43	1.11
112568--112594	13	2.1	13	100	0	54	18	22	7	51	1.70
112643--112676	17	2.0	17	100	0	68	29	17	17	35	1.93
115140--115193	16	3.1	16	76	23	63	35	16	11	37	1.84
115145--115184	21	1.9	21	100	0	80	35	20	10	35	1.86
115247--115288	22	1.9	22	100	0	84	57	7	14	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115322--115368	22	2.1	22	84	7	60	72	2	8	17	1.19
115338--115375	17	2.2	17	90	0	58	68	5	7	18	1.34
115400--115486	41	2.0	44	89	8	135	64	0	3	32	1.10
115739--115782	22	2.0	22	100	0	88	50	0	9	40	1.34
120500--120532	16	2.1	16	94	0	57	27	6	0	66	1.15
121121--121151	14	2.2	14	100	0	62	29	12	6	51	1.65
125299--125367	21	3.3	21	87	2	95	11	24	8	55	1.64
127745--127804	18	3.3	18	90	0	93	28	13	26	31	1.94
130395--130437	20	2.0	20	91	8	68	51	0	4	44	1.22
135092--135131	15	2.8	14	85	14	55	22	7	0	70	1.12

Tables:   1   2