genome.fa.s9457.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009457.1 Hibiscus syriacus cultivar Beakdansim tig00113716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  528656

Tables:   1   2   

This is table  2  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219723--219786	33	1.9	33	90	0	101	43	18	7	29	1.78
219723--219803	33	2.5	33	83	4	92	39	19	11	29	1.86
220086--220148	26	2.4	25	77	12	65	23	6	0	69	1.11
220142--220220	40	2.0	40	81	11	94	26	3	3	65	1.26
220972--221014	17	2.5	17	96	0	77	16	4	0	79	0.90
221006--221048	23	2.0	23	86	9	63	20	13	11	53	1.71
221014--221082	23	2.9	24	86	2	86	18	18	11	50	1.76
222217--222255	19	2.1	18	90	4	60	48	5	2	43	1.38
222748--222772	2	12.5	2	100	0	50	48	0	0	52	1.00
222627--222922	160	1.9	160	97	0	565	38	9	6	45	1.63
225687--225745	27	2.2	27	100	0	118	40	11	23	23	1.88
228744--228785	21	2.0	20	86	4	57	40	7	14	38	1.73
230305--230333	2	14.5	2	100	0	58	48	0	0	51	1.00
231743--231879	47	3.0	46	91	3	222	15	24	20	40	1.91
242749--242781	7	4.7	7	96	0	57	0	24	15	60	1.35
261740--261765	13	2.0	13	100	0	52	38	15	15	30	1.88
266984--267030	25	2.0	23	84	15	62	51	10	2	36	1.49
268491--268548	28	2.1	28	100	0	116	43	29	6	20	1.78
283848--283913	4	16.5	4	93	0	105	50	4	0	45	1.22
293459--293498	17	2.2	17	86	8	53	70	2	0	27	1.01
311115--311175	31	2.0	31	86	0	86	31	18	9	40	1.83
330945--330977	16	2.1	16	94	0	57	39	3	18	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331280--331313	15	2.2	16	94	5	61	26	0	0	73	0.83
333354--333392	10	4.3	10	75	24	50	58	20	10	10	1.59
333358--333390	16	2.1	16	100	0	66	57	24	12	6	1.57
333458--333522	16	4.1	16	93	0	112	56	21	12	9	1.63
333454--333528	10	7.7	10	68	21	52	57	20	12	10	1.64
334040--334088	24	2.0	24	96	0	89	44	26	20	8	1.79
340205--340272	36	1.9	34	85	5	91	27	0	20	51	1.48
347082--347139	5	11.6	5	98	0	98	41	15	18	24	1.89
348822--348846	3	8.3	3	100	0	50	64	0	0	36	0.94
349008--349392	131	2.9	131	83	6	474	25	15	30	28	1.96
349470--349510	21	2.0	21	85	4	57	41	17	21	19	1.90
349397--349640	65	3.8	64	81	8	298	38	14	20	25	1.91
349397--349640	129	1.9	130	87	7	363	38	14	20	25	1.91
349397--349692	129	2.3	128	83	8	361	38	13	20	27	1.90
349659--349753	36	2.6	37	83	8	131	40	11	22	26	1.88
349659--349753	37	2.6	35	82	11	120	40	11	22	26	1.88
351004--351056	28	1.9	29	81	11	67	3	13	3	79	1.01
351330--351356	13	2.1	13	100	0	54	40	0	14	44	1.46
360073--360102	6	5.0	6	91	0	51	33	20	30	16	1.94
382255--382304	2	25.5	2	80	11	59	52	2	0	46	1.12
382255--382303	15	3.3	15	83	11	64	51	2	0	46	1.12
382255--382302	17	2.6	19	87	12	73	52	2	0	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382393--382595	37	5.9	33	76	21	129	43	3	6	45	1.49
382404--382706	41	8.2	36	73	20	161	46	4	5	43	1.46
382440--382558	61	1.9	62	88	5	179	44	2	5	47	1.41
382464--382527	25	2.6	25	85	5	85	40	3	6	50	1.43
382489--382706	36	5.6	38	77	15	171	47	4	5	43	1.45
382519--382706	41	4.7	40	80	11	210	49	4	5	40	1.45
382519--382706	81	2.4	79	86	8	260	49	4	5	40	1.45
382674--382736	32	2.0	31	87	12	92	57	7	3	31	1.43
382825--382851	14	1.9	14	100	0	54	37	0	3	59	1.15
382821--382896	23	3.3	23	78	7	66	30	1	1	67	1.07
382860--382906	19	2.5	20	80	13	55	23	4	0	72	1.02
384084--384141	3	19.7	3	82	10	75	27	3	0	68	1.05
384230--384271	17	2.5	17	84	3	59	14	9	0	76	1.02
384242--384302	26	2.4	25	78	10	70	18	6	0	75	1.01
384261--384369	8	12.9	8	67	14	51	13	5	4	76	1.13
384279--384303	12	2.1	12	100	0	50	16	0	0	84	0.63
384318--384369	17	3.1	17	77	0	59	13	0	7	78	0.94
391814--391847	2	17.0	2	100	0	68	50	0	0	50	1.00
392322--392359	16	2.3	16	86	13	51	73	0	21	5	1.02
401343--401405	23	2.7	23	92	0	99	38	20	4	36	1.74
400994--402047	430	2.5	431	96	2	1935	39	12	7	40	1.71
401777--401835	23	2.6	23	94	0	100	44	15	3	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402258--402343	39	2.2	39	93	0	145	18	13	18	48	1.80
402600--402636	18	2.1	18	89	0	56	51	10	5	32	1.60
403052--403120	23	2.8	26	72	20	67	39	17	5	37	1.74
403068--403121	23	2.3	23	93	0	90	40	16	5	37	1.72
407153--407236	21	3.9	22	75	14	68	14	25	35	25	1.93
414241--415414	183	6.4	183	97	0	2107	33	16	14	36	1.89
414241--415414	548	2.1	549	95	0	2143	33	16	14	36	1.89
416646--416688	20	2.3	18	85	14	61	20	16	11	51	1.75
416651--416697	20	2.4	19	82	10	67	19	17	10	53	1.72
416820--416879	20	3.0	20	83	13	79	18	15	13	53	1.73
417923--417975	2	27.5	2	77	7	56	50	0	0	49	1.00
417930--418038	53	2.0	54	87	5	159	46	0	0	53	1.00
418100--418167	35	1.9	36	87	3	102	19	32	13	35	1.90
424464--424501	18	2.1	18	100	0	76	31	10	21	36	1.87
431828--431955	60	2.1	60	94	1	220	57	7	10	25	1.56
449383--449427	13	3.5	13	82	11	65	13	40	4	42	1.64
449380--449432	26	2.0	26	100	0	106	16	37	3	41	1.67
454429--454506	36	2.2	35	97	2	147	42	15	10	32	1.80
458978--459007	15	2.0	15	100	0	60	13	46	26	13	1.80
459430--459505	36	2.1	36	100	0	152	42	15	10	31	1.81
465937--466384	228	2.0	227	94	3	785	44	8	7	39	1.62
466450--466495	20	2.3	19	89	10	74	54	10	17	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466616--466662	20	2.4	19	79	10	58	55	8	17	19	1.67
468975--469040	33	2.0	33	87	0	96	28	1	45	24	1.62
470825--470868	19	2.4	19	92	3	72	31	2	9	56	1.43
470948--472573	200	8.1	200	97	0	3032	37	15	15	31	1.88
474039--474130	12	7.4	12	77	11	69	34	8	34	21	1.84
474051--474133	15	5.7	15	80	8	82	34	7	34	22	1.82
475602--476256	184	3.6	184	98	0	1229	35	14	15	34	1.88
483975--484018	20	2.2	20	88	4	63	29	22	9	38	1.85
487255--487289	16	2.2	16	100	0	70	31	31	0	37	1.58
491053--491084	2	16.0	2	100	0	64	50	0	0	50	1.00
498665--498710	11	4.5	10	84	10	58	17	2	17	63	1.42
498655--498710	21	2.7	20	83	8	67	16	1	19	62	1.41
500008--500056	14	3.8	14	79	20	70	8	12	24	55	1.64
499991--500063	24	3.0	24	97	0	137	8	12	24	54	1.64
501152--501202	16	3.3	15	84	10	68	11	7	17	62	1.51
508264--508304	8	5.2	8	82	5	57	34	0	29	36	1.58
508372--508973	126	4.8	126	98	0	1174	21	25	20	32	1.97
508372--508971	251	2.4	251	98	0	1168	21	25	20	32	1.97
509354--509457	32	3.2	33	83	9	140	38	2	4	53	1.37
509969--510062	21	4.5	21	92	5	129	20	26	35	18	1.95
510066--510113	21	2.3	21	85	0	60	22	12	39	25	1.89
511827--511905	33	2.4	34	83	8	101	60	1	0	37	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512738--512816	21	3.8	20	88	8	113	22	16	27	32	1.96
512740--512875	21	6.8	21	73	13	106	22	14	28	33	1.94
513147--513235	31	2.9	31	93	3	144	25	12	15	46	1.81
513147--513250	31	3.4	30	86	7	129	26	13	16	43	1.85

Tables:   1   2

The End!