genome.fa.s9458.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009458.1 Hibiscus syriacus cultivar Beakdansim tig00113719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1407308

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 671 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303591--1303662	31	2.6	25	71	22	63	43	4	20	31	1.71
1303647--1303687	18	2.3	18	91	0	64	36	2	21	39	1.67
1304600--1304629	2	15.0	2	100	0	60	50	0	0	50	1.00
1305679--1305724	21	2.2	21	96	0	83	19	28	28	23	1.98
1305810--1306177	186	2.0	184	94	1	637	45	9	3	41	1.54
1307900--1308219	139	2.4	133	84	7	389	29	12	16	41	1.85
1309854--1309894	15	2.9	14	82	7	55	46	0	2	51	1.14
1324609--1324636	3	9.3	3	100	0	56	0	0	32	67	0.91
1335027--1335052	2	13.0	2	100	0	52	50	0	0	50	1.00
1337583--1337703	31	3.9	31	78	9	131	49	9	3	37	1.53
1337935--1337979	25	1.9	22	82	13	54	48	2	6	42	1.41
1339526--1339559	18	1.9	18	88	5	52	29	32	23	14	1.94
1348420--1348447	2	14.0	2	100	0	56	50	0	0	50	1.00
1348903--1348942	14	2.9	14	85	3	55	32	0	0	67	0.91
1349542--1349635	49	1.9	49	97	2	181	31	10	8	48	1.68
1350107--1350163	23	2.5	22	77	11	60	35	17	5	42	1.72
1350234--1350279	24	1.9	24	82	8	58	32	0	0	67	0.91
1351005--1351034	13	2.3	13	94	0	51	56	0	0	43	0.99
1351371--1351405	17	2.1	17	100	0	70	60	5	0	34	1.21
1351761--1351798	3	12.3	3	94	5	67	36	0	0	63	0.95
1353791--1353830	21	1.9	21	84	0	53	40	0	0	60	0.97
1360685--1360766	31	2.8	28	81	15	94	41	6	10	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1360696--1360755	31	2.0	30	93	3	102	38	6	11	43	1.68
1360697--1360782	28	2.9	29	86	5	102	40	8	11	39	1.71
1363422--1363490	36	1.9	36	88	5	104	17	55	11	15	1.70
1365252--1365305	18	3.0	18	91	0	90	33	27	20	18	1.96
1365821--1366408	81	7.5	81	85	5	590	35	23	23	17	1.95
1365863--1366446	75	7.5	75	88	5	613	35	22	24	16	1.95
1365863--1367035	150	7.4	152	78	11	931	35	22	24	17	1.95
1366351--1366547	101	2.0	101	98	0	385	36	20	25	17	1.94
1366452--1367035	75	7.5	75	83	7	688	35	22	23	18	1.95
1366276--1366627	176	2.0	176	98	0	677	36	21	25	17	1.95
1366201--1366697	251	2.0	251	96	0	924	36	21	25	17	1.94
1366135--1366769	326	1.9	326	94	1	1112	36	21	25	17	1.95
1366452--1367275	81	10.5	78	81	6	747	35	23	23	17	1.95
1372213--1372561	20	17.5	20	84	4	418	35	25	18	20	1.95
1373460--1373484	12	2.1	12	100	0	50	72	0	28	0	0.86
1375764--1376017	19	14.4	19	78	17	298	47	18	20	14	1.83
1375764--1376017	33	7.2	34	84	12	286	47	18	20	14	1.83
1375764--1376017	108	2.4	105	88	7	369	47	18	20	14	1.83
1375831--1376039	52	3.9	52	91	4	337	46	17	20	15	1.83
1376046--1376147	19	5.6	19	85	12	151	14	23	17	44	1.86
1376253--1376289	14	2.6	14	91	0	65	45	21	0	32	1.52
1378235--1378291	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1378216--1378308	33	2.8	33	95	0	168	47	21	20	10	1.80
1378179--1378313	19	7.6	19	76	16	128	45	23	19	11	1.82
1378309--1378399	33	2.8	32	88	5	130	10	18	24	46	1.81
1378338--1378436	19	5.4	19	74	12	82	12	16	25	46	1.81
1378372--1378436	19	3.4	19	87	6	87	10	13	27	47	1.76
1378480--1378943	92	5.1	93	94	4	840	46	18	12	22	1.83
1378480--1378943	180	2.6	184	95	3	852	46	18	12	22	1.83
1380620--1380709	14	5.7	14	74	23	81	42	23	25	8	1.83
1380612--1380726	33	3.5	33	95	0	212	45	20	24	9	1.81
1380619--1380731	19	6.8	18	72	23	88	43	22	24	9	1.83
1380743--1380797	14	3.6	14	73	21	56	9	25	23	41	1.83
1380727--1380797	33	2.2	33	94	0	124	8	22	25	43	1.81
1380738--1380819	33	2.5	33	89	2	119	9	25	21	42	1.84
1380783--1380838	20	2.8	20	86	0	76	14	26	17	41	1.88
1380916--1380986	33	2.2	33	92	0	115	47	18	22	11	1.80
1381166--1381220	22	2.5	22	81	0	74	20	16	40	23	1.91
1381366--1381557	20	9.6	20	82	4	226	19	19	26	34	1.96
1381366--1381557	60	3.2	60	82	2	251	19	19	26	34	1.96
1381613--1381663	20	2.6	20	96	3	95	21	13	27	37	1.91
1384958--1384982	2	12.5	2	100	0	50	48	0	0	52	1.00
1386842--1386968	61	2.1	61	96	0	236	40	14	11	33	1.82
1388842--1388868	14	1.9	14	100	0	54	11	14	22	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1390517--1390561	21	2.1	21	83	0	54	31	13	6	48	1.68
1392083--1392163	5	15.2	5	78	15	74	17	2	7	72	1.18
1399146--1399171	8	3.2	8	100	0	52	26	0	0	73	0.84
1400523--1400695	36	4.9	36	87	7	221	33	24	23	17	1.96
1401663--1401761	31	3.2	31	86	2	135	38	10	9	42	1.70

Tables:   1   2   3   4   5   6

The End!