genome.fa.s9459.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009459.1 Hibiscus syriacus cultivar Beakdansim tig00113721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1147073

Tables:   1   2   3   4   

This is table  3  of  4  ( 466 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658932--660295	682	2.0	680	96	2	2553	33	21	18	26	1.96
661176--661244	32	2.1	33	89	2	104	43	15	13	27	1.84
662031--662072	21	2.0	21	100	0	84	9	33	9	47	1.68
677849--677873	13	1.9	13	100	0	50	32	8	28	32	1.86
681342--681372	5	6.2	5	100	0	62	19	61	0	19	1.35
681599--681655	29	2.0	29	92	0	96	15	33	29	21	1.94
681666--681690	12	2.1	12	100	0	50	40	8	36	16	1.77
681719--681774	29	1.9	29	92	0	94	12	35	30	21	1.90
681859--681886	14	2.0	14	100	0	56	7	28	42	21	1.79
681839--681872	10	3.4	10	84	15	52	8	29	38	23	1.85
684660--684706	20	2.3	20	92	0	76	46	25	12	14	1.80
684696--684778	19	4.4	19	96	0	157	38	19	10	31	1.86
684696--684790	38	2.5	38	92	1	145	38	18	10	31	1.85
685688--685739	24	2.2	24	92	0	86	19	19	21	40	1.92
687992--688027	18	2.0	18	94	0	63	55	25	2	16	1.55
688353--688391	20	2.0	20	94	0	69	41	25	12	20	1.88
688496--688553	25	2.3	25	90	0	89	29	10	18	41	1.84
689106--689245	66	2.2	60	86	7	181	51	17	0	30	1.50
690621--690696	21	3.6	21	77	10	84	22	22	31	23	1.98
693151--693198	22	2.2	22	96	0	87	20	12	43	22	1.86
699845--699932	43	2.0	43	89	4	133	26	18	21	34	1.96
705943--706034	39	2.3	40	87	9	136	45	1	18	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705943--706056	39	2.9	38	81	13	126	47	0	17	34	1.54
709740--709784	22	2.0	22	100	0	90	24	31	4	40	1.75
713292--713341	2	25.0	2	100	0	100	50	0	0	50	1.00
720978--721063	37	2.3	38	88	6	131	38	24	16	20	1.93
723812--723856	21	2.1	21	87	0	63	31	28	24	15	1.96
725271--725361	23	4.0	23	82	0	110	17	24	26	31	1.97
728029--728075	17	2.9	15	81	9	58	36	0	21	42	1.53
730416--730502	23	3.8	23	87	0	129	17	26	25	31	1.97
730738--730777	22	1.9	21	85	10	55	32	0	17	50	1.47
733446--733481	17	2.1	17	100	0	72	41	11	5	41	1.64
736200--736378	17	10.2	17	72	20	113	37	0	4	57	1.23
736197--736371	12	14.6	12	72	21	120	38	0	4	56	1.24
736188--736375	51	3.6	52	82	11	187	37	1	4	56	1.26
736239--736375	15	9.1	15	75	15	74	37	0	2	58	1.18
738547--738580	2	17.0	2	100	0	68	50	0	0	50	1.00
743479--743507	13	2.2	13	100	0	58	55	6	6	31	1.53
743641--743872	115	2.1	108	86	10	312	47	4	6	40	1.50
744100--744147	20	2.5	19	83	6	60	16	0	4	79	0.89
747790--747841	16	3.2	16	78	10	61	30	23	7	38	1.83
756830--757167	158	2.1	158	85	4	450	28	17	5	49	1.69
763444--763493	27	2.0	25	81	14	59	36	6	8	50	1.57
764452--764498	18	2.7	18	80	3	51	38	6	25	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772932--772982	22	2.3	22	80	6	59	31	11	9	47	1.73
773627--773654	2	14.0	2	100	0	56	50	0	0	50	1.00
777075--777106	4	8.0	4	100	0	64	25	0	25	50	1.50
778901--778970	3	23.0	3	85	2	86	38	0	1	60	1.06
778901--778979	18	4.2	18	78	15	81	40	0	1	58	1.06
780442--780517	35	2.2	35	79	9	84	35	3	1	59	1.24
788053--788197	45	3.2	45	61	16	107	31	12	20	35	1.90
787937--788267	93	3.6	93	97	0	601	28	13	22	36	1.91
787937--788312	93	4.1	93	93	2	598	28	13	21	36	1.91
790454--790626	54	3.3	54	88	2	244	39	15	20	24	1.91
791702--792464	76	10.0	76	97	0	1384	21	21	21	34	1.96
792620--792695	3	25.0	3	91	2	116	35	0	1	63	1.03
795877--795945	28	2.4	29	88	7	97	55	17	13	14	1.70
795935--796024	46	1.9	47	84	6	121	41	15	10	33	1.81
800523--800559	19	1.9	19	88	0	56	48	8	13	29	1.71
800613--800646	12	2.8	12	81	0	50	52	0	20	26	1.46
808368--808650	111	2.5	111	97	1	532	56	10	12	20	1.65
809566--809602	2	18.5	2	100	0	74	51	0	0	48	1.00
818985--819151	83	2.0	84	95	4	304	48	15	7	28	1.71
823963--824069	56	1.9	56	94	0	187	39	15	19	25	1.91
824590--824680	46	2.0	46	91	0	146	36	15	23	25	1.94
832220--832253	14	2.5	14	85	4	52	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832279--832315	12	3.1	12	96	0	65	32	0	5	62	1.18
833855--833929	37	2.0	37	82	10	91	49	4	1	45	1.29
833884--834217	176	1.9	176	96	0	625	42	5	7	45	1.54
836168--836218	25	2.0	26	88	3	77	43	1	3	50	1.31
837245--837295	19	2.7	19	90	0	75	47	5	13	33	1.67
841485--841572	44	2.0	44	100	0	176	31	15	22	29	1.95
844427--844462	16	2.2	17	90	5	56	22	2	2	72	1.11
851796--851825	15	2.0	15	100	0	60	13	26	13	46	1.80
866814--866847	17	1.9	17	88	5	50	61	0	0	38	0.96
868069--868110	22	1.9	22	85	9	59	35	9	0	54	1.33
868231--868294	29	2.2	29	91	0	101	28	28	7	35	1.85
871487--871529	21	2.0	21	86	8	61	67	2	0	30	1.03
871487--871528	22	2.0	21	85	4	57	69	2	0	28	1.01
871942--871988	24	1.9	25	82	4	60	29	19	10	40	1.85
875672--875733	31	2.0	31	96	0	115	30	25	8	35	1.85
877320--877348	3	9.7	3	100	0	58	65	0	0	34	0.93
877347--877377	3	10.3	3	100	0	62	35	0	0	64	0.94
881828--881864	19	1.9	19	88	0	56	35	16	0	48	1.46
882351--882395	21	2.1	21	100	0	90	44	33	4	17	1.69
884788--884820	8	4.1	8	88	11	50	84	12	0	3	0.72
884788--884868	7	11.0	7	82	11	56	79	9	6	4	1.06
884788--884868	14	5.5	15	76	8	67	79	9	6	4	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884793--884844	17	3.2	16	84	12	63	82	5	3	7	0.93
885177--885244	21	3.2	21	83	4	84	51	8	25	14	1.71
886017--886053	19	2.1	18	90	10	58	37	13	0	48	1.43
886032--886098	35	1.9	34	82	8	82	38	10	2	47	1.53
886067--886115	22	2.3	21	86	10	73	36	8	2	53	1.43
886090--886145	18	3.1	18	74	5	51	41	10	1	46	1.49
886179--886403	2	112.0	2	67	18	94	47	2	4	45	1.38
886280--886403	21	5.9	22	76	19	88	49	0	3	46	1.23
887320--887397	23	3.3	23	81	1	93	32	23	20	24	1.98
887404--887621	103	2.1	103	95	0	391	36	22	13	26	1.92
898334--898902	284	2.0	284	98	0	1111	33	19	15	30	1.93
901744--901769	2	13.0	2	100	0	52	50	0	0	50	1.00
904947--905490	270	2.0	270	92	0	901	20	13	33	31	1.92
907820--907861	13	3.2	13	93	0	75	50	11	14	23	1.76
908228--908284	30	1.9	30	85	7	80	43	12	0	43	1.41
908403--908496	47	2.0	47	91	0	152	46	0	5	47	1.25
908399--908475	23	3.3	24	68	12	70	42	0	6	50	1.28
908405--908508	47	2.2	47	86	3	129	48	0	4	46	1.30
910035--910070	17	2.1	17	100	0	72	22	30	22	25	1.99
924083--924195	60	1.9	59	90	1	181	41	2	21	34	1.67
924101--924194	29	3.2	29	67	5	71	43	3	19	34	1.67
924022--924210	60	3.2	59	79	8	168	38	4	23	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928284--928330	15	2.8	17	75	15	53	57	0	0	42	0.98
930201--930463	144	1.8	146	83	6	356	37	6	6	49	1.55
930948--930999	24	2.2	24	86	6	70	32	5	0	61	1.20
933341--933436	15	6.7	15	71	20	55	21	16	7	54	1.67
935390--935450	8	6.9	8	74	20	50	77	0	14	8	0.99
936041--936101	32	1.9	32	100	0	122	42	16	18	22	1.89
940014--940065	19	2.6	19	84	9	68	36	11	15	36	1.84
940728--941159	45	9.6	45	93	0	713	24	23	19	32	1.97
941332--941385	3	18.0	3	92	7	92	35	0	0	64	0.94
943014--943047	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4