genome.fa.s9465.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009465.1 Hibiscus syriacus cultivar Beakdansim tig00113809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63520

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7921--8009	33	2.8	32	82	1	115	20	37	28	14	1.92
8056--8188	32	4.2	32	93	1	205	18	36	30	14	1.90
8271--8368	31	3.1	31	66	13	92	13	39	37	9	1.76
8234--8368	63	2.1	63	98	0	261	13	39	37	10	1.79
8152--8440	157	1.8	158	88	5	451	15	35	36	12	1.85
8403--8536	32	4.2	32	89	0	187	17	35	30	15	1.92
8297--8685	95	4.1	95	72	9	369	16	33	36	12	1.87
21533--21621	33	2.8	32	82	1	115	20	37	28	14	1.92
21668--21800	32	4.2	32	93	1	205	18	36	30	14	1.90
21884--21981	31	3.1	31	66	13	92	13	39	37	9	1.76
21847--21981	63	2.1	63	98	0	261	13	39	37	10	1.79
21732--21958	95	2.4	94	71	10	244	15	37	34	12	1.85
21764--22053	158	1.8	158	89	4	460	15	35	36	12	1.85
22016--22149	32	4.2	32	89	0	187	17	35	30	15	1.92
21910--22298	95	4.1	95	72	9	369	16	33	36	12	1.87
21607--22267	349	1.9	348	95	0	1196	17	34	34	13	1.88
30497--30585	33	2.8	32	82	1	115	20	37	28	14	1.92
30632--30763	32	4.2	32	92	2	196	18	37	30	14	1.90
30810--30943	62	2.1	63	95	2	252	13	39	36	10	1.79
30727--31015	157	1.8	157	89	4	458	15	35	36	12	1.85
30978--31110	32	4.2	32	88	2	178	17	36	30	15	1.91
30978--31110	63	2.1	65	85	2	180	17	36	30	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30571--31228	347	1.9	347	94	1	1176	17	34	34	13	1.88
30873--31259	95	4.1	95	73	7	372	16	34	36	12	1.87
39406--39492	31	2.8	32	77	7	97	20	37	26	14	1.92
39539--39669	32	4.2	32	90	4	187	17	37	30	14	1.90
39537--39669	63	2.1	63	87	5	198	17	36	31	14	1.89
39716--39848	62	2.1	63	94	4	243	13	39	36	10	1.79
39634--39920	156	1.8	156	88	5	438	15	36	35	12	1.85
39883--39998	31	3.7	31	86	6	162	18	36	28	16	1.93
39727--40083	188	1.9	187	84	7	483	16	36	33	12	1.87
39883--40013	31	4.2	32	84	5	160	17	36	29	16	1.92
39883--40013	62	2.1	64	86	2	185	17	36	29	16	1.92
39778--40159	92	4.1	93	71	20	294	17	34	35	13	1.88
48269--48355	31	2.8	31	77	7	95	20	37	27	13	1.91
48402--48532	32	4.2	32	90	4	187	18	37	29	14	1.90
48400--48532	63	2.1	63	86	5	189	18	36	30	14	1.90
48616--48711	31	3.1	30	64	15	79	13	40	36	9	1.77
48579--48711	61	2.1	63	97	2	252	13	39	36	10	1.79
48590--48948	187	1.9	185	85	7	487	17	36	33	12	1.87
48746--48868	32	3.9	31	87	3	165	19	36	28	15	1.92
48642--49008	91	4.0	90	69	21	276	17	35	34	12	1.88
57078--57163	32	2.7	32	80	3	102	20	37	26	15	1.92
57212--57337	31	4.0	32	89	5	177	19	37	29	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57207--57337	63	2.1	63	84	7	178	18	37	29	14	1.90
57383--57513	62	2.1	61	95	2	237	13	40	35	10	1.80
57390--57491	31	3.3	31	67	11	93	13	42	32	11	1.81
57306--57583	154	1.8	153	86	6	411	16	36	35	11	1.85
57548--57675	31	4.2	30	83	7	150	17	37	29	14	1.90
57640--57813	96	1.8	95	92	1	294	17	35	34	12	1.87
57640--57833	96	2.0	95	89	2	291	16	35	35	12	1.86

Tables:   1

The End!