genome.fa.s9466.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009466.1 Hibiscus syriacus cultivar Beakdansim tig00114086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93824

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10985--11072	33	2.7	32	82	5	104	20	32	29	17	1.95
11157--11241	33	2.6	33	86	1	109	18	35	30	15	1.92
10853--11432	169	3.4	170	94	1	1015	17	33	32	16	1.92
11326--11410	33	2.6	33	92	1	136	18	36	29	15	1.92
11435--11468	17	2.0	17	100	0	68	17	35	29	17	1.93
11919--11950	11	2.9	11	100	0	64	9	43	37	9	1.69
25535--25619	33	2.6	33	88	1	118	20	34	29	16	1.94
25703--25787	32	2.7	31	84	8	102	17	37	30	14	1.89
25398--25967	166	3.4	168	92	3	972	16	34	32	16	1.91
25866--25950	33	2.6	33	92	1	136	18	36	29	15	1.92
26008--26071	32	2.0	33	90	3	103	18	35	31	14	1.91
34539--34623	33	2.6	33	88	1	118	20	34	29	16	1.94
34708--34792	33	2.6	33	90	1	127	20	35	29	15	1.93
34402--34982	169	3.4	170	95	1	1035	17	33	33	16	1.92
34876--35065	32	5.6	32	76	13	184	17	35	31	15	1.91
34874--35085	105	2.0	104	95	2	381	16	33	33	15	1.91
35451--35482	11	2.9	11	95	0	55	9	40	37	12	1.75
43515--43599	33	2.6	33	88	1	118	20	34	29	16	1.94
43684--43766	33	2.6	32	88	5	116	20	36	28	14	1.92
43851--44039	33	5.6	33	77	12	188	16	35	31	15	1.91
43843--44061	106	2.1	104	95	1	393	15	34	33	15	1.90
43957--44042	30	2.7	32	89	5	122	16	39	29	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43378--43957	169	3.4	170	95	1	1033	17	33	33	16	1.92
43884--44192	104	3.1	102	83	9	318	16	34	34	14	1.89
44428--44459	11	2.9	11	95	0	55	9	40	37	12	1.75
52502--52586	33	2.6	33	88	1	118	20	34	29	16	1.94
52365--52946	169	3.4	170	96	0	1051	17	33	33	16	1.92
52671--52755	33	2.6	33	90	1	127	20	35	29	15	1.93
52840--53029	32	5.6	32	79	11	200	17	35	31	15	1.91
52832--53051	105	2.1	106	96	0	406	16	34	33	15	1.91
53416--53447	11	2.9	11	95	0	55	9	40	37	12	1.75
61492--61576	33	2.6	33	88	1	118	20	34	29	16	1.94
61355--61935	169	3.4	170	96	0	1042	17	33	33	16	1.92
61661--61745	33	2.6	33	90	1	127	20	35	29	15	1.93
61829--62019	33	5.6	33	77	11	197	17	35	31	15	1.91
61829--62019	65	2.8	66	74	13	197	17	35	31	15	1.91
61821--62041	106	2.1	106	97	0	415	16	34	33	15	1.91
62407--62438	11	2.9	11	95	0	55	9	40	37	12	1.75
70474--70556	29	2.7	30	80	14	89	20	37	26	15	1.93
70637--70721	33	2.6	33	90	1	127	20	35	29	15	1.93
70335--70911	168	3.4	170	94	2	1006	17	33	32	16	1.92
70805--70995	33	5.6	33	77	11	197	17	35	31	15	1.91
70805--70995	65	2.8	66	74	13	197	17	35	31	15	1.91
70797--71017	106	2.1	106	97	0	415	16	34	33	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71384--71415	11	2.9	11	95	0	55	9	40	37	12	1.75
79417--79501	33	2.6	33	88	1	118	20	34	29	16	1.94
79361--79860	169	3.0	170	95	0	898	16	33	33	16	1.92
79586--79670	33	2.6	33	90	1	127	20	35	29	15	1.93
79755--79943	32	5.6	32	76	12	175	17	35	30	15	1.91
79755--79943	64	2.8	65	74	14	193	17	35	30	15	1.91
79747--79965	105	2.1	105	95	1	395	16	34	32	15	1.91
79860--79943	33	2.6	33	88	3	118	17	36	29	15	1.91
79289--79907	169	3.7	166	86	9	768	16	34	32	16	1.92
80330--80361	11	2.9	11	95	0	55	9	40	37	12	1.75
88393--88477	33	2.6	33	88	1	118	20	34	29	16	1.94
88256--88837	169	3.4	170	96	0	1051	17	33	33	16	1.92
88562--88646	33	2.6	33	90	1	127	20	35	29	15	1.93
88731--88921	33	5.6	33	77	11	197	17	35	31	15	1.91
88731--88921	65	2.8	66	74	13	197	17	35	31	15	1.91
88723--88943	106	2.1	106	97	0	415	16	34	33	15	1.91
89311--89342	11	2.9	11	95	0	55	9	40	37	12	1.75

Tables:   1

The End!