genome.fa.s9471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009471.1 Hibiscus syriacus cultivar Beakdansim tig00114144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66572

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814--1945	32	4.2	32	87	3	178	15	31	34	18	1.92
2002--2105	31	3.3	32	68	15	92	11	34	40	13	1.81
1980--2112	63	2.1	62	95	2	241	10	37	38	13	1.79
2159--2291	32	4.2	32	91	2	196	14	30	36	18	1.90
2159--2424	64	4.0	64	71	16	211	15	32	33	19	1.92
2336--2424	33	2.8	32	82	1	115	14	28	37	20	1.92
10592--10977	95	4.1	94	72	8	370	12	36	33	17	1.88
10740--10872	32	4.2	32	88	2	187	15	30	35	18	1.92
10740--10872	65	2.1	63	87	2	185	15	30	35	18	1.92
10930--11031	31	3.4	31	68	18	97	11	35	39	13	1.82
10907--11038	61	2.1	62	97	1	248	10	37	37	13	1.80
10835--11119	154	1.8	156	88	5	445	12	37	34	15	1.85
11084--11214	32	4.2	32	91	4	196	14	31	35	18	1.91
11084--11214	63	2.1	63	88	5	194	14	31	35	18	1.91
11261--11349	33	2.8	32	82	1	115	14	28	37	20	1.92
19536--19923	95	4.1	94	72	7	372	12	36	33	17	1.88
19685--19817	32	4.2	32	88	2	187	15	30	35	18	1.92
19685--19817	65	2.1	63	87	2	185	15	30	35	18	1.92
19852--19985	63	2.1	62	97	1	250	10	37	38	13	1.79
19852--19949	31	3.1	31	66	13	92	9	37	39	13	1.76
19609--19974	190	1.9	190	85	6	510	12	34	35	17	1.87
19875--19978	31	3.3	32	68	15	92	11	34	40	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19875--20106	94	2.4	96	71	11	242	12	35	35	15	1.86
19780--20068	157	1.8	158	89	5	460	12	36	35	15	1.85
20032--20164	32	4.2	32	91	2	196	14	30	36	18	1.90
19567--20225	347	1.9	348	95	0	1187	13	35	34	17	1.88
20211--20299	33	2.8	32	82	1	115	14	28	37	20	1.92
28633--28766	32	4.2	32	88	1	187	15	30	35	17	1.92
28824--28928	32	3.3	32	68	13	101	11	34	40	13	1.80
28801--28935	63	2.1	63	98	0	261	10	37	39	13	1.79
28801--28898	31	3.1	31	66	13	92	9	37	39	13	1.76
28982--29113	32	4.2	32	92	3	205	14	31	36	18	1.90
28665--29084	158	2.7	159	80	8	532	13	34	34	17	1.89
28665--29247	158	3.6	156	75	11	443	13	34	33	18	1.90
29160--29247	33	2.7	31	81	6	113	14	28	36	20	1.92
37439--37825	95	4.1	94	72	8	379	12	36	33	17	1.88
37588--37720	32	4.2	32	88	2	187	15	30	35	18	1.92
37588--37720	65	2.1	63	87	2	185	15	30	35	18	1.92
37778--37881	31	3.3	32	68	15	92	11	34	40	13	1.81
37755--37888	62	2.1	63	97	1	252	10	37	38	13	1.79
37683--37971	157	1.8	158	88	5	451	12	36	35	15	1.85
37935--38067	32	4.2	32	91	2	196	14	30	36	18	1.90
37935--38201	64	4.0	65	71	16	217	14	32	33	19	1.92
37470--38127	347	1.9	346	94	0	1174	13	35	34	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38114--38201	33	2.7	31	81	6	113	14	28	36	20	1.92
46538--46671	32	4.2	32	88	1	187	15	30	35	17	1.92
46729--46832	31	3.3	32	68	15	92	11	34	40	13	1.81
46706--46839	62	2.1	63	97	1	252	10	37	38	13	1.79
46886--47017	32	4.2	32	92	3	205	14	31	36	18	1.90
46570--46988	157	2.7	158	80	8	528	13	34	34	17	1.89
47063--47151	33	2.8	32	82	1	115	14	28	37	20	1.92
55329--55715	94	4.1	95	72	7	365	12	36	33	17	1.88
55477--55609	32	4.2	32	88	2	187	15	30	35	18	1.92
55477--55609	65	2.1	63	87	2	185	15	30	35	18	1.92
55667--55771	32	3.3	32	68	13	101	11	34	40	13	1.80
55644--55778	63	2.1	63	98	0	261	10	37	39	13	1.79
55644--55741	31	3.1	31	66	13	92	9	37	39	13	1.76
55401--55767	190	1.9	191	85	6	512	12	34	35	17	1.87
55825--55957	32	4.2	32	91	2	196	14	30	36	18	1.90
55508--55928	158	2.7	159	80	7	532	13	34	34	17	1.89
56004--56092	33	2.8	32	82	1	115	14	28	37	20	1.92
64250--64634	95	4.1	95	72	9	365	12	36	33	17	1.87
64399--64530	32	4.2	32	86	4	178	15	31	35	18	1.91
64405--64529	30	4.0	30	86	5	151	15	31	34	19	1.92
64565--64695	61	2.1	61	95	2	237	9	38	38	13	1.78
64493--64776	155	1.8	155	88	6	441	11	37	35	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64742--64874	32	4.2	32	91	2	196	14	30	36	18	1.90
64921--65009	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!