Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009478.1 Hibiscus syriacus cultivar Beakdansim tig00114333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47394

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2879--3102
32
6.8
31
73
16
123
16
30
37
15
1.90
2862--3146
137
2.1
136
95
2
520
17
32
34
14
1.91
2917--3112
104
1.9
105
83
7
256
16
32
36
14
1.90
3022--3104
32
2.6
33
90
3
125
15
28
37
18
1.91
3000--3568
165
3.4
166
89
6
888
16
31
34
17
1.92
3355--3433
32
2.5
32
77
8
88
17
27
34
20
1.95
11478--11509
11
2.9
11
100
0
64
9
37
43
9
1.69
11899--12119
32
6.6
32
74
15
151
16
30
36
16
1.91
11899--12121
33
6.6
33
75
13
195
16
30
36
16
1.91
11936--12151
65
3.2
65
72
16
231
17
30
37
14
1.90
11880--12164
138
2.1
138
98
0
552
17
32
35
15
1.91
11880--12257
138
2.8
137
88
6
466
16
32
35
16
1.91
12015--12596
169
3.4
170
95
0
1033
16
32
33
16
1.92
12206--12290
33
2.6
33
88
1
118
16
30
35
17
1.92
12378--12459
33
2.5
33
84
2
103
17
29
34
19
1.94
26047--26078
11
2.9
11
100
0
64
9
37
43
9
1.69
26470--26690
32
6.6
32
74
15
151
16
30
36
16
1.91
26470--26692
33
6.6
33
75
13
195
16
30
36
16
1.91
26507--26722
65
3.2
65
72
16
231
17
30
37
14
1.90
26447--26735
138
2.1
138
98
0
560
17
32
34
15
1.91
26586--27167
169
3.4
170
95
0
1033
16
32
33
16
1.92
26447--26828
138
2.8
137
88
6
474
16
32
34
16
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26777--26861
33
2.6
33
88
1
118
16
30
35
17
1.92
26949--27030
33
2.5
33
84
2
103
17
29
34
19
1.94
35500--35720
32
6.6
32
74
15
151
16
30
36
16
1.91
35500--35722
33
6.6
33
75
13
195
16
30
36
16
1.91
35537--35752
65
3.2
65
72
16
231
17
30
37
14
1.90
35481--35765
138
2.1
138
98
0
552
17
32
35
15
1.91
35616--36197
169
3.4
170
94
0
1024
16
32
33
17
1.92
35481--35858
138
2.8
137
88
6
466
16
32
35
16
1.91
35807--35891
33
2.6
33
86
1
109
15
30
35
18
1.92
35979--36060
33
2.5
33
84
2
103
17
29
34
19
1.94
44489--44708
33
6.6
33
76
12
200
16
30
36
16
1.91
44473--44744
136
2.0
135
97
0
517
17
31
35
15
1.91
44525--44738
65
3.2
65
74
14
245
17
30
36
14
1.91
44473--44843
136
2.7
135
87
7
436
16
31
35
16
1.92
44789--44872
32
2.7
30
82
8
96
15
28
36
19
1.92
44608--45180
167
3.4
170
93
2
994
16
32
33
17
1.92
44962--45043
33
2.5
33
84
2
103
17
29
34
19
1.94
46877--46924
22
2.1
23
92
3
80
18
33
41
6
1.76

Tables:   1

The End!