genome.fa.s9480.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009480.1 Hibiscus syriacus cultivar Beakdansim tig00114450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41668

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8021--8108	33	2.7	32	78	5	104	21	36	27	14	1.93
8153--8281	61	2.1	61	84	7	172	18	37	28	14	1.91
8153--8282	31	4.2	32	85	9	164	18	37	29	14	1.90
8337--8457	62	2.0	61	95	4	217	14	42	33	9	1.78
8337--8440	31	3.3	30	65	21	79	14	44	30	10	1.79
8184--8595	154	2.7	155	77	9	454	17	36	32	14	1.89
8489--8621	31	4.2	31	81	7	133	18	36	28	16	1.92
8489--8621	62	2.1	65	84	5	173	18	36	28	16	1.92
8597--8637	21	2.0	21	90	9	66	14	46	29	9	1.77
16893--16979	31	2.8	32	75	8	97	20	37	26	14	1.92
17026--17157	32	4.2	32	92	2	196	18	37	30	14	1.90
17241--17337	30	3.1	31	66	16	92	13	40	37	9	1.77
17204--17337	62	2.1	63	98	1	261	13	39	36	10	1.79
17090--17314	94	2.4	93	70	12	233	16	37	34	12	1.86
17372--17501	31	4.2	31	85	4	163	18	36	28	16	1.92
17372--17501	63	2.1	62	84	4	163	18	36	28	16	1.92
17267--17636	93	4.0	92	70	19	293	17	34	34	12	1.88
25822--25910	33	2.8	32	82	1	115	20	37	28	14	1.92
25957--26088	32	4.2	32	92	2	196	18	37	30	14	1.90
26172--26269	31	3.1	31	66	13	92	13	39	37	9	1.76
26135--26269	63	2.1	63	98	0	261	13	39	37	10	1.79
26053--26341	158	1.8	157	88	5	449	15	35	36	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26021--26246	95	2.4	93	70	11	233	15	37	34	12	1.86
26304--26437	32	4.2	32	89	0	187	17	35	30	15	1.92
26198--26586	95	4.1	95	72	9	369	16	33	36	12	1.87
34714--34802	33	2.8	32	82	1	115	20	37	28	14	1.92
34849--34979	31	4.2	32	90	4	187	18	37	29	14	1.90
34847--34979	63	2.1	63	86	5	189	18	36	30	14	1.90
35063--35159	30	3.1	31	66	16	92	13	40	37	9	1.77
34943--35231	157	1.8	157	89	4	458	15	35	36	12	1.85
35026--35159	62	2.1	63	98	1	261	13	39	36	10	1.79
35090--35470	94	4.1	92	70	11	317	17	34	35	12	1.87
35194--35318	31	3.9	32	87	3	171	19	36	29	15	1.92

Tables:   1

The End!