Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009482.1 Hibiscus syriacus cultivar Beakdansim tig00114496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39536

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3005--3088
32
2.6
32
88
3
116
19
34
29
16
1.94
3167--3253
32
2.7
31
89
5
129
18
37
28
14
1.91
2874--3437
162
3.4
167
90
6
897
16
34
32
16
1.92
3333--3519
31
5.6
31
75
14
142
17
36
29
16
1.92
3325--3541
104
2.1
105
93
3
368
16
35
31
16
1.92
3325--3610
104
2.8
104
84
8
300
16
35
32
15
1.90
3899--3926
11
2.5
11
100
0
56
7
46
35
10
1.66
11825--11908
32
2.6
32
84
5
107
20
34
28
16
1.94
11825--11911
31
2.7
32
82
10
106
19
36
27
16
1.93
11993--12078
31
2.7
31
85
7
111
17
38
27
16
1.91
11993--12075
32
2.6
32
86
5
107
18
36
28
16
1.93
11693--12265
167
3.4
168
93
3
964
16
34
32
16
1.92
12160--12354
33
5.6
33
70
20
130
17
35
30
16
1.92
20820--20904
33
2.6
32
84
1
107
21
34
28
16
1.95
20684--21263
169
3.4
169
95
1
1031
16
33
32
16
1.92
20989--21075
32
2.7
31
87
5
120
17
37
28
16
1.91
21157--21378
33
6.6
32
76
14
189
16
36
31
16
1.91
21114--21400
137
2.1
138
98
0
549
15
34
32
17
1.91
20684--21378
169
4.1
170
90
4
1018
16
34
32
16
1.92
21114--21469
137
2.6
136
90
3
520
15
34
33
16
1.90
20684--21378
337
2.1
336
89
5
996
16
34
32
16
1.92
21769--21800
10
3.1
10
95
4
55
9
40
40
9
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35606--35690
33
2.6
32
84
1
107
21
34
28
16
1.95
35775--35860
32
2.7
31
85
7
111
17
38
29
15
1.90
35469--36046
167
3.4
168
93
1
991
16
33
32
16
1.92
35941--36157
32
6.6
33
70
17
157
17
35
30
16
1.92
35899--36179
133
2.1
134
96
2
519
15
33
32
17
1.92
36546--36577
11
2.9
11
100
0
64
9
43
37
9
1.69

Tables:   1

The End!