genome.fa.s9485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009485.1 Hibiscus syriacus cultivar Beakdansim tig00114552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83743

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5464--5648	94	2.0	95	91	1	300	11	36	35	16	1.85
5612--5749	32	4.3	32	87	2	188	15	31	34	17	1.92
5644--6056	157	2.6	156	80	8	491	13	34	34	17	1.89
5786--5909	60	2.0	61	92	6	207	10	36	38	14	1.81
5708--5992	155	1.8	154	86	8	409	12	37	34	15	1.85
5956--6088	32	4.2	32	91	2	196	14	30	36	18	1.90
6135--6223	33	2.8	32	82	1	115	14	28	37	20	1.92
14389--14776	95	4.1	95	72	6	381	12	36	33	17	1.88
14538--14670	32	4.2	32	86	3	178	15	30	35	18	1.92
14570--14986	158	2.6	157	81	4	525	13	34	34	17	1.89
14728--14832	32	3.3	32	68	13	101	11	34	40	13	1.80
14705--14839	63	2.1	63	98	0	261	10	37	39	13	1.79
14705--14802	31	3.1	31	66	13	92	9	37	39	13	1.76
14462--14828	190	1.9	191	85	6	512	12	34	35	17	1.87
14886--15018	32	4.2	32	91	2	196	14	30	36	18	1.90
14420--15079	348	1.9	348	95	0	1187	13	35	34	17	1.88
15065--15153	33	2.8	32	82	1	115	14	28	37	20	1.92
23306--23693	95	4.1	94	72	8	372	12	36	33	17	1.88
23455--23588	32	4.2	32	88	1	187	15	30	35	17	1.92
23646--23746	31	3.4	31	65	18	79	11	35	39	12	1.81
23623--23753	62	2.2	60	95	2	235	10	38	38	12	1.79
23551--23835	154	1.8	157	88	6	438	12	37	35	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23800--23931	32	4.2	32	92	3	205	14	31	36	18	1.90
23978--24066	33	2.8	32	82	1	115	14	28	37	20	1.92
32333--32466	32	4.2	32	88	1	187	15	30	35	17	1.92
32524--32628	32	3.3	32	68	13	101	11	34	40	13	1.80
32501--32635	63	2.1	63	98	0	261	10	37	39	13	1.79
32501--32598	31	3.1	31	66	13	92	9	37	39	13	1.76
32429--32717	157	1.8	158	88	5	451	12	36	35	15	1.85
32681--32813	32	4.2	32	91	2	196	14	30	36	18	1.90
32365--32784	158	2.7	159	80	8	523	13	34	34	17	1.89
32365--32948	158	3.6	155	75	10	446	13	34	34	17	1.90
32860--32948	33	2.8	32	82	1	115	14	28	37	20	1.92
41125--41509	93	4.1	95	71	10	333	12	36	33	17	1.88
41271--41403	32	4.2	32	88	2	187	15	30	35	18	1.92
41271--41403	65	2.1	63	87	2	185	15	30	35	18	1.92
41461--41565	32	3.3	32	68	13	101	11	34	40	13	1.80
41438--41572	63	2.1	63	98	0	261	10	37	39	13	1.79
41438--41535	31	3.1	31	66	13	92	9	37	39	13	1.76
41196--41561	190	1.9	190	85	6	501	12	34	35	17	1.87
41619--41750	32	4.2	32	92	3	205	14	31	36	18	1.90
41302--41721	158	2.7	159	80	8	532	13	34	34	17	1.89
41302--41885	158	3.6	156	75	11	459	13	34	34	17	1.90
41797--41885	33	2.8	32	82	1	115	14	28	37	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50188--50318	32	4.2	32	82	7	160	16	30	35	17	1.92
50188--50318	61	2.1	64	84	5	169	16	30	35	17	1.92
50353--50485	62	2.1	63	95	2	243	10	36	39	13	1.79
50375--50478	31	3.3	32	68	15	92	11	34	40	13	1.81
50531--50662	32	4.2	32	92	3	205	14	31	36	18	1.90
50220--50633	156	2.7	157	79	10	499	13	34	34	17	1.89
59110--59242	32	4.2	32	88	2	187	15	30	35	18	1.92
59110--59242	65	2.1	63	87	2	185	15	30	35	18	1.92
59301--59403	31	3.3	32	68	17	92	11	34	39	13	1.81
59277--59410	62	2.1	63	94	4	236	10	37	38	13	1.79
59035--59399	189	1.9	189	85	7	499	12	34	35	17	1.87
59457--59588	32	4.2	31	89	4	192	14	31	36	18	1.90
59141--59559	157	2.6	157	81	9	519	13	34	34	17	1.89
59457--59588	63	2.1	64	89	1	203	14	31	36	18	1.90
59010--59649	346	1.9	345	94	1	1149	12	35	34	17	1.88
59635--59722	31	2.8	31	82	1	113	13	28	37	20	1.91
67854--68239	95	4.1	93	72	8	350	12	36	33	17	1.88
68003--68135	32	4.2	32	86	3	178	15	30	35	18	1.92
68003--68135	63	2.1	65	85	2	180	15	30	35	18	1.92
68192--68295	31	3.3	32	68	15	92	11	34	40	13	1.81
68170--68302	63	2.1	62	95	2	241	10	37	38	13	1.79
68098--68384	156	1.8	157	88	5	447	12	36	35	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68349--68480	32	4.2	32	92	3	205	14	31	36	18	1.90
68035--68451	157	2.7	157	80	8	508	13	34	34	17	1.89
67885--68541	346	1.9	346	94	1	1165	13	35	34	17	1.89
68527--68615	33	2.8	32	82	1	115	14	28	37	20	1.92
76936--77069	32	4.2	32	88	1	187	15	30	35	17	1.92
77127--77229	31	3.4	31	68	16	97	11	34	39	13	1.81
77104--77236	62	2.1	62	98	0	257	10	37	38	13	1.79
77032--77319	156	1.8	158	88	5	451	12	36	35	15	1.85
77283--77414	32	4.2	32	90	3	187	14	31	36	18	1.90
77461--77549	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!