genome.fa.s9494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009494.1 Hibiscus syriacus cultivar Beakdansim tig00114681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44583

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1147--1179	11	3.0	11	90	0	57	15	36	39	9	1.79
1564--1754	33	5.6	33	77	11	197	15	31	35	17	1.91
1565--1754	65	2.8	65	72	15	175	15	31	35	16	1.91
1543--1762	106	2.1	105	96	0	404	15	33	34	16	1.91
1648--2229	169	3.4	170	95	0	1042	16	32	33	17	1.92
1839--1923	33	2.6	33	90	1	127	15	29	35	20	1.93
2011--2092	33	2.5	33	88	2	112	17	30	34	18	1.94
10150--10182	11	3.0	11	90	0	57	15	36	39	9	1.79
10573--10762	33	5.6	33	77	12	197	15	31	35	17	1.91
10551--10770	105	2.1	106	96	0	406	15	33	34	16	1.91
10503--10939	137	3.2	136	77	12	514	16	34	33	16	1.91
10657--11237	169	3.4	170	95	0	1042	16	33	33	17	1.92
10847--10931	33	2.6	33	90	1	127	15	29	35	20	1.93
11019--11100	33	2.5	33	88	2	112	17	30	34	18	1.94
24704--24736	11	3.0	11	90	0	57	15	36	39	9	1.79
25127--25317	33	5.6	33	77	11	197	15	31	35	17	1.91
25105--25325	106	2.1	106	97	0	415	15	33	34	16	1.91
25211--25792	169	3.4	170	96	0	1051	16	33	33	17	1.92
25402--25486	33	2.6	33	90	1	127	15	29	35	20	1.93
25574--25655	33	2.5	33	88	2	112	17	30	34	18	1.94
33708--33740	11	3.0	11	90	0	57	15	36	39	9	1.79
34129--34319	33	5.6	33	77	11	197	15	31	35	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34107--34327	106	2.1	106	97	0	415	15	33	34	16	1.91
34213--34794	169	3.4	170	96	0	1051	16	33	33	17	1.92
34404--34488	33	2.6	33	90	1	127	15	29	35	20	1.93
34576--34657	33	2.5	33	88	2	112	17	30	34	18	1.94
42676--42708	11	3.0	11	90	0	57	15	36	39	9	1.79
43093--43283	33	5.6	33	77	11	197	15	31	35	17	1.91
43072--43291	106	2.1	105	96	0	404	15	33	34	16	1.91
43177--43752	167	3.4	168	95	0	1030	16	33	32	17	1.92
43366--43450	33	2.6	33	90	1	127	15	29	35	20	1.93
43536--43617	33	2.5	33	88	2	112	17	30	34	18	1.94

Tables:   1

The End!