genome.fa.s9505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009505.1 Hibiscus syriacus cultivar Beakdansim tig00115109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57026

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466--552	32	2.8	32	80	1	104	20	37	26	14	1.92
597--726	32	4.2	31	89	6	183	17	37	30	14	1.90
595--726	62	2.1	63	87	4	196	17	37	31	14	1.90
810--907	31	3.1	31	66	13	92	13	39	37	9	1.76
773--907	63	2.1	63	98	0	261	13	39	37	10	1.79
660--884	95	2.4	92	70	13	231	15	37	34	12	1.85
784--1147	189	1.9	189	84	7	490	17	36	33	12	1.87
620--1042	158	2.7	156	81	8	516	17	34	34	13	1.88
945--1073	32	4.0	32	87	2	170	18	35	30	15	1.92
9336--9421	29	2.8	30	77	8	93	20	38	26	13	1.91
9467--9579	32	3.6	32	92	4	185	20	36	28	15	1.92
9639--9768	61	2.1	61	95	2	235	13	40	34	10	1.80
9803--9934	32	4.2	32	86	3	169	18	36	29	15	1.92
18161--18249	33	2.8	32	82	1	115	20	37	28	14	1.92
18296--18419	32	3.9	32	93	2	196	19	37	29	13	1.90
18508--18602	30	3.1	30	63	13	77	13	41	35	9	1.77
18396--18672	155	1.8	150	86	6	405	16	36	35	11	1.85
18471--18602	60	2.1	63	95	4	243	13	40	35	10	1.79
18636--18767	32	4.2	32	86	3	169	18	36	29	15	1.92
18636--18767	63	2.1	64	84	4	169	18	36	29	15	1.92
18534--18916	95	4.1	94	70	11	327	17	34	35	13	1.88
18235--18885	343	1.9	341	93	2	1128	17	35	34	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27030--27117	31	2.8	31	80	3	104	20	37	27	14	1.92
27030--27277	64	3.8	63	68	21	177	20	33	31	15	1.93
27164--27295	32	4.2	32	92	2	196	18	37	30	14	1.90
27378--27473	31	3.1	30	64	15	79	13	40	36	9	1.77
27228--27450	93	2.4	91	69	12	209	16	37	33	12	1.86
27260--27545	155	1.8	156	88	5	445	15	36	35	12	1.85
27341--27473	61	2.1	63	97	2	252	13	39	36	10	1.79
27508--27640	32	4.2	32	87	2	178	18	36	30	15	1.92
27508--27640	63	2.1	65	85	2	180	18	36	30	15	1.92
27404--27775	95	4.0	94	71	12	323	17	34	34	12	1.88
35938--36026	33	2.8	32	82	1	115	20	37	28	14	1.92
36072--36200	31	4.2	31	92	2	197	18	37	28	14	1.91
36284--36380	30	3.1	31	66	16	92	13	40	37	9	1.77
36165--36452	156	1.8	157	88	5	449	15	36	36	12	1.85
36247--36380	62	2.1	63	98	1	261	13	39	36	10	1.79
36134--36357	94	2.4	93	70	12	224	16	37	33	12	1.86
36311--36691	94	4.1	92	72	8	356	17	34	35	12	1.88
36415--36544	32	4.2	32	83	8	160	17	36	30	15	1.91
36415--36544	60	2.1	62	84	7	165	17	36	30	15	1.91
36012--36647	343	1.9	341	93	3	1116	17	35	33	12	1.88
44819--44906	32	2.8	32	78	5	106	20	37	27	14	1.92
44953--45083	31	4.2	32	91	3	187	18	37	29	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44951--45083	63	2.1	63	86	5	189	18	36	30	14	1.90
45137--45237	31	3.3	31	65	13	84	13	42	31	11	1.81
45130--45261	62	2.1	61	97	1	246	13	40	35	10	1.79
45296--45428	32	4.2	32	88	1	178	18	36	30	15	1.92
45191--45576	94	4.1	95	71	11	326	17	34	35	12	1.88
53715--53802	33	2.8	32	80	3	106	20	37	27	14	1.92
53849--53970	32	3.9	31	90	5	176	19	38	28	13	1.89
53849--53971	62	2.0	61	88	4	185	19	38	28	13	1.90
54061--54158	31	3.1	31	66	13	92	13	39	37	9	1.76
54025--54158	63	2.1	62	97	1	250	13	39	36	10	1.79
53910--54134	94	2.4	93	70	11	231	16	37	34	12	1.86
54088--54472	94	4.1	93	70	9	339	17	34	35	12	1.88
53942--54229	157	1.8	156	88	5	438	15	36	36	12	1.85
54036--54400	189	1.9	189	85	6	499	17	36	33	12	1.87
54193--54324	32	4.2	32	86	3	169	18	36	29	15	1.92

Tables:   1

The End!