genome.fa.s9512.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009512.1 Hibiscus syriacus cultivar Beakdansim tig00115573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32025

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747--836	33	2.7	33	84	3	110	20	33	30	16	1.94
920--1003	33	2.6	32	84	3	98	19	35	29	15	1.92
618--1190	167	3.4	168	92	3	937	16	34	32	16	1.92
1046--1235	32	5.7	32	72	17	106	14	36	30	18	1.91
1086--1303	33	6.6	33	74	14	157	16	36	30	16	1.91
1043--1322	135	2.1	136	94	3	494	14	35	31	18	1.91
618--1273	334	2.0	334	87	7	958	16	34	32	16	1.92
1690--1722	11	2.9	11	95	4	57	9	42	36	12	1.74
9738--9822	33	2.6	32	84	1	107	21	34	28	16	1.95
9905--9989	33	2.6	33	86	1	109	18	35	30	15	1.92
9603--10179	169	3.4	168	93	1	996	17	33	33	16	1.92
10074--10295	33	6.6	33	76	16	197	16	36	31	15	1.91
10044--10258	65	3.2	64	72	18	220	14	36	31	17	1.90
9938--10313	137	2.8	137	88	5	487	16	34	32	16	1.91
10074--10295	32	6.6	32	77	14	198	16	36	31	15	1.91
9603--10295	169	4.1	167	88	5	909	17	33	32	16	1.92
10685--10716	11	2.9	11	100	0	64	9	43	37	9	1.69
23407--23491	33	2.6	32	84	1	107	21	34	28	16	1.95
23271--23849	168	3.4	168	94	0	1007	17	33	32	16	1.92
23575--23659	33	2.6	33	86	1	109	18	35	30	15	1.92
23743--23965	32	6.6	33	76	13	195	16	36	30	16	1.91
23713--23928	65	3.2	65	72	16	231	14	37	30	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23700--23984	138	2.1	138	98	0	552	15	35	32	17	1.91
24359--24386	11	2.5	11	100	0	56	10	42	39	7	1.67
26974--27000	13	2.1	13	100	0	54	29	14	18	37	1.91

Tables:   1

The End!