genome.fa.s9517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009517.1 Hibiscus syriacus cultivar Beakdansim tig00115731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50069

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5650--5682	11	3.0	11	90	0	57	15	36	39	9	1.79
6071--6271	77	2.8	71	79	14	218	16	32	33	17	1.92
6090--6298	108	1.9	108	91	4	341	16	31	34	17	1.92
5981--6443	141	3.4	136	75	13	494	15	33	33	16	1.91
6353--6435	31	2.6	33	88	5	118	15	30	36	18	1.92
6200--6737	168	3.2	169	92	4	894	16	32	33	17	1.92
6523--6604	33	2.5	33	88	2	112	17	30	34	18	1.94
20098--20130	11	3.0	11	90	0	57	15	36	39	9	1.79
20519--20713	33	5.6	33	75	15	178	16	32	34	16	1.91
20511--20717	110	1.9	111	96	1	389	15	33	34	15	1.90
20622--21187	169	3.4	168	93	3	967	16	32	33	17	1.92
20795--20883	34	2.7	32	89	8	135	13	28	38	20	1.90
20970--21051	33	2.5	33	88	2	112	17	30	34	18	1.94
29092--29124	11	3.0	11	90	0	57	15	36	39	9	1.79
29505--29695	33	5.6	33	77	13	190	15	31	35	17	1.91
29484--29703	106	2.1	105	96	0	404	15	34	33	16	1.91
29589--30167	168	3.4	169	95	0	1036	16	33	32	17	1.92
29779--29863	33	2.6	33	90	1	127	15	29	35	20	1.93
29950--30031	33	2.5	33	88	2	112	17	30	34	18	1.94
38448--38638	33	5.6	33	77	11	197	15	31	35	17	1.91
38426--38646	106	2.1	106	97	0	415	15	33	34	16	1.91
38721--38806	34	2.6	34	88	3	122	15	30	34	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38532--39104	168	3.4	169	92	4	959	16	33	32	17	1.92
38889--38969	33	2.6	32	84	7	103	17	29	33	19	1.95

Tables:   1

The End!