genome.fa.s9520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009520.1 Hibiscus syriacus cultivar Beakdansim tig00115782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63376

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2390--2474	33	2.6	33	88	1	118	20	34	29	16	1.94
2253--2834	169	3.4	170	95	0	1042	17	33	32	16	1.92
2559--2643	33	2.6	33	90	1	127	20	35	29	15	1.93
2728--2918	33	5.6	33	77	11	197	17	35	31	15	1.91
2728--2918	65	2.8	66	74	13	197	17	35	31	15	1.91
2720--2940	106	2.1	106	97	0	415	16	34	33	15	1.91
3310--3341	11	2.9	11	95	0	55	9	40	37	12	1.75
15914--15998	33	2.6	33	88	1	118	20	34	29	16	1.94
15777--16358	169	3.4	170	96	0	1051	17	33	33	16	1.92
16083--16167	33	2.6	33	90	1	127	20	35	29	15	1.93
16252--16442	33	5.6	33	77	11	197	17	35	31	15	1.91
16252--16442	65	2.8	66	74	13	197	17	35	31	15	1.91
16244--16464	106	2.1	106	96	0	406	16	33	33	16	1.91
16834--16865	11	2.9	11	95	0	55	9	40	37	12	1.75
29599--29683	33	2.6	33	88	1	118	20	34	29	16	1.94
29462--30043	169	3.4	170	95	0	1042	17	33	32	16	1.92
29768--29852	33	2.6	33	90	1	127	20	35	29	15	1.93
29937--30127	33	5.6	33	77	11	197	17	35	31	15	1.91
29937--30127	65	2.8	66	74	13	197	17	35	31	15	1.91
29929--30149	106	2.1	106	97	0	415	16	34	33	15	1.91
30519--30550	11	2.9	11	95	0	55	9	40	37	12	1.75
38616--38700	33	2.6	33	88	1	118	20	34	29	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38479--39060	169	3.4	170	95	0	1042	17	33	32	16	1.92
38785--38869	33	2.6	33	90	1	127	20	35	29	15	1.93
38954--39144	33	5.6	33	77	11	197	17	35	31	15	1.91
38954--39144	65	2.8	66	74	13	197	17	35	31	15	1.91
38946--39166	106	2.1	106	97	0	415	16	34	33	15	1.91
39536--39567	11	2.9	11	95	0	55	9	40	37	12	1.75
53377--53461	33	2.6	33	88	1	118	20	34	29	16	1.94
53240--53820	169	3.4	170	96	0	1051	17	33	33	16	1.92
53546--53630	33	2.6	33	90	1	127	20	35	29	15	1.93
53714--53902	32	5.6	32	76	14	175	17	35	31	15	1.92
53820--53902	31	2.6	31	88	5	114	18	36	30	15	1.92
53706--53924	104	2.1	106	95	1	397	16	34	33	15	1.91
53747--54053	104	3.1	104	83	8	311	16	34	34	14	1.89
54289--54320	11	2.9	11	95	0	55	9	40	37	12	1.75
62369--62448	32	2.5	32	83	4	90	20	33	28	17	1.95
62234--62797	163	3.4	167	89	6	886	17	34	31	16	1.92
62534--62618	32	2.7	31	84	10	111	17	40	28	14	1.88
62697--62882	33	5.6	33	77	15	195	17	37	30	15	1.91
62689--62903	101	2.1	105	94	4	384	16	35	32	15	1.90
62730--63032	101	3.1	98	82	11	304	16	35	33	14	1.89
62532--62950	134	3.1	134	74	13	461	16	35	32	15	1.91
63271--63302	11	2.9	11	100	0	64	9	43	37	9	1.69

Tables:   1

The End!