genome.fa.s9521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009521.1 Hibiscus syriacus cultivar Beakdansim tig00115784_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68396

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5589--5621	11	3.0	11	90	0	57	15	36	39	9	1.79
6011--6201	33	5.6	33	77	11	197	15	31	35	17	1.91
5989--6209	106	2.1	106	97	0	415	15	33	34	16	1.91
6285--6369	33	2.6	33	90	1	127	15	29	35	20	1.93
6095--6673	168	3.4	168	95	0	1032	16	33	33	17	1.92
6457--6538	33	2.5	33	88	2	112	17	30	34	18	1.94
14566--14598	11	3.0	11	90	0	57	15	36	39	9	1.79
14977--15166	33	5.6	33	77	12	197	15	31	35	17	1.91
14955--15174	105	2.1	106	96	0	406	15	33	34	16	1.91
14907--15343	137	3.2	136	77	12	514	16	34	33	16	1.91
15251--15335	33	2.6	33	90	1	127	15	29	35	20	1.93
15422--15503	33	2.5	33	88	2	112	17	30	34	18	1.94
15061--15639	169	3.4	168	95	1	1025	16	33	33	17	1.92
23509--23541	11	3.0	11	90	0	57	15	36	39	9	1.79
23924--24113	33	5.6	33	77	12	197	15	31	35	17	1.91
23903--24121	105	2.1	105	97	0	411	15	33	33	16	1.91
24198--24282	33	2.6	33	90	1	127	15	29	35	20	1.93
24369--24450	33	2.5	33	88	2	112	17	30	34	18	1.94
24008--24587	169	3.4	169	95	0	1038	16	33	33	17	1.92
32508--32540	11	3.0	11	90	0	57	15	36	39	9	1.79
32931--33121	33	5.6	33	77	11	197	15	31	35	17	1.91
32909--33129	106	2.1	106	97	0	415	15	33	34	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33206--33290	33	2.6	33	90	1	127	15	29	35	20	1.93
33015--33595	168	3.4	170	95	1	1042	16	33	33	17	1.92
33377--33458	33	2.5	33	88	2	112	17	30	34	18	1.94
41516--41548	11	3.0	11	90	0	57	15	36	39	9	1.79
41938--42127	33	5.6	33	77	12	197	15	31	35	17	1.91
41916--42135	105	2.1	106	96	0	406	15	33	34	16	1.91
41868--42304	137	3.2	136	77	12	514	16	34	33	16	1.91
42022--42602	169	3.4	170	95	0	1042	16	33	33	17	1.92
42212--42296	33	2.6	33	90	1	127	15	29	35	20	1.93
42384--42465	33	2.5	33	88	2	112	17	30	34	18	1.94
50522--50554	11	3.0	11	90	0	57	15	36	39	9	1.79
50944--51134	33	5.6	33	77	11	197	15	31	35	17	1.91
50922--51142	106	2.1	106	97	0	415	15	33	34	16	1.91
51028--51607	168	3.4	169	95	1	1029	16	33	33	17	1.92
51218--51302	33	2.6	33	90	1	127	15	29	35	20	1.93
51389--51470	33	2.5	33	88	2	112	17	30	34	18	1.94
59530--59562	11	3.0	11	90	0	57	15	36	39	9	1.79
59951--60141	33	5.6	33	77	11	197	15	31	35	17	1.91
59930--60149	106	2.1	105	96	0	404	15	33	34	16	1.91
60035--60616	169	3.4	170	96	0	1051	16	33	33	17	1.92
60226--60310	33	2.6	33	90	1	127	15	29	35	20	1.93
60398--60479	33	2.5	33	88	2	112	17	30	34	18	1.94

Tables:   1

The End!