genome.fa.s9531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009531.1 Hibiscus syriacus cultivar Beakdansim tig00116198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68975

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4391--4423	11	3.0	11	90	0	57	15	36	39	9	1.79
4813--5003	33	5.6	33	77	11	197	15	31	35	17	1.91
4791--5011	106	2.1	106	97	0	415	15	33	34	16	1.91
4897--5474	169	3.4	169	94	2	1011	16	33	33	16	1.92
5088--5172	33	2.6	33	90	1	127	15	29	35	20	1.93
5257--5338	33	2.5	33	88	2	112	17	30	34	18	1.94
13374--13406	11	3.0	11	90	0	57	15	36	39	9	1.79
13794--13983	33	5.6	33	78	10	204	15	31	35	16	1.91
13774--13983	105	2.0	105	98	0	402	15	32	35	15	1.90
13879--14458	169	3.4	169	95	1	1018	16	33	33	16	1.92
14068--14152	33	2.6	33	90	1	127	15	29	35	20	1.93
14240--14321	33	2.5	33	88	2	112	17	30	34	18	1.94
22342--22374	11	3.0	11	90	0	57	15	36	39	9	1.79
22762--22951	33	5.6	33	77	12	197	15	31	35	17	1.91
22740--22959	105	2.1	106	96	0	406	15	33	34	16	1.91
22692--23128	137	3.2	136	77	12	514	16	34	33	16	1.91
22846--23426	169	3.4	170	95	0	1042	16	33	33	17	1.92
23036--23120	33	2.6	33	90	1	127	15	29	35	20	1.93
23208--23289	33	2.5	33	88	2	112	17	30	34	18	1.94
31274--31306	11	3.0	11	90	0	57	15	36	39	9	1.79
31696--31879	32	5.4	32	74	14	154	15	31	34	17	1.92
31675--31892	105	2.1	104	94	2	384	16	33	33	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779--32357	168	3.4	169	95	0	1011	16	32	33	17	1.92
31969--32053	33	2.6	33	90	1	127	15	29	35	20	1.93
31626--32061	137	3.2	137	74	15	497	15	33	33	16	1.91
32141--32221	32	2.5	33	86	4	103	17	29	34	18	1.94
44781--44813	11	3.0	11	90	0	57	15	36	39	9	1.79
45204--45394	33	5.6	33	77	11	197	15	31	35	17	1.91
45182--45402	106	2.1	106	97	0	415	15	33	34	16	1.91
45288--45869	169	3.4	170	95	0	1042	16	32	33	17	1.92
45479--45563	33	2.6	33	90	1	127	15	29	35	20	1.93
45651--45732	33	2.5	33	88	2	112	17	30	34	18	1.94
58556--58588	11	3.0	11	90	0	57	15	36	39	9	1.79
58978--59167	33	5.6	33	77	11	188	15	31	35	17	1.91
58956--59175	106	2.1	105	96	0	404	15	33	34	16	1.91
59251--59335	33	2.6	33	90	1	127	15	29	35	20	1.93
59062--59641	169	3.4	170	95	0	1033	16	32	33	17	1.92
59423--59504	33	2.5	33	88	2	112	17	30	34	18	1.94
67530--67562	11	3.0	11	90	0	57	15	36	39	9	1.79
67949--68136	32	5.6	33	76	14	188	15	30	36	17	1.91
67927--68144	104	2.1	105	94	2	386	16	33	34	16	1.91
68055--68136	33	2.5	33	92	2	130	15	30	36	17	1.91
68220--68304	33	2.6	33	90	1	127	15	29	35	20	1.93
68387--68468	32	2.6	32	86	0	110	15	29	34	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68034--68606	168	3.4	169	93	2	987	16	32	33	17	1.92

Tables:   1

The End!