genome.fa.s9532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009532.1 Hibiscus syriacus cultivar Beakdansim tig00116199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63231

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002--1034	11	3.0	11	90	0	57	15	36	39	9	1.79
1424--1612	33	5.6	33	77	11	195	15	30	35	17	1.91
1405--1620	104	2.1	105	96	1	398	16	32	35	16	1.91
1510--2086	169	3.4	170	95	1	1018	16	32	33	17	1.92
1697--1781	33	2.6	33	90	1	127	15	29	35	20	1.93
1869--1949	32	2.5	33	86	4	103	17	29	34	18	1.94
14776--14808	11	3.0	11	90	0	57	15	36	39	9	1.79
15198--15388	33	5.6	33	77	11	197	15	31	35	17	1.91
15177--15396	106	2.1	105	96	0	404	15	33	34	16	1.91
15282--15862	169	3.4	170	95	0	1042	16	33	33	17	1.92
15473--15557	33	2.6	33	90	1	127	15	29	35	20	1.93
15645--15726	33	2.5	33	88	2	112	17	30	34	18	1.94
23787--23819	11	3.0	11	90	0	57	15	36	39	9	1.79
24208--24398	33	5.6	33	77	11	197	15	31	35	17	1.91
24186--24406	106	2.1	106	97	0	415	15	33	34	16	1.91
24292--24872	169	3.4	170	95	0	1033	16	32	33	17	1.92
24483--24567	33	2.6	33	90	1	127	15	29	35	20	1.93
24655--24735	32	2.5	33	86	4	103	17	29	34	18	1.94
33168--33355	33	5.6	33	78	12	195	15	31	35	17	1.92
33146--33363	104	2.1	105	94	2	386	16	33	33	16	1.91
33251--33823	168	3.4	168	93	2	969	16	33	32	17	1.93
33098--33530	136	3.2	135	76	13	492	16	34	33	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33439--33522	33	2.6	32	90	3	125	15	29	34	20	1.93
33607--33688	33	2.6	32	86	5	112	17	29	32	20	1.95
41662--41699	20	1.9	20	88	0	58	13	42	36	7	1.73
42082--42266	32	5.6	32	77	11	183	15	31	34	17	1.92
42060--42276	103	2.1	104	94	1	382	15	34	33	16	1.91
42012--42444	135	3.2	135	75	12	479	15	34	33	16	1.91
42352--42436	33	2.6	33	90	1	127	15	29	35	20	1.93
42165--42742	169	3.4	169	95	0	1018	16	33	33	17	1.92
42524--42605	33	2.5	33	88	2	112	17	30	34	18	1.94
50638--50670	11	3.0	11	90	0	57	15	36	39	9	1.79
51057--51246	33	5.6	33	77	12	197	15	31	35	17	1.91
51035--51254	105	2.1	106	96	0	406	15	33	34	16	1.91
50987--51423	137	3.2	136	77	12	514	16	34	33	16	1.91
51141--51721	169	3.4	170	95	0	1042	16	33	33	17	1.92
51331--51415	33	2.6	33	90	1	127	15	29	35	20	1.93
51503--51584	33	2.5	33	88	2	112	17	30	34	18	1.94
59621--59653	11	3.0	11	90	0	57	15	36	39	9	1.79
60038--60228	33	5.6	33	77	11	197	15	31	35	17	1.91
60017--60236	106	2.1	105	96	0	404	15	33	34	16	1.91
60313--60397	33	2.6	33	90	1	127	15	29	35	20	1.93
60122--60701	169	3.4	170	95	0	1033	16	33	33	17	1.92
60484--60565	33	2.5	33	88	2	112	17	30	34	18	1.94

Tables:   1

The End!