genome.fa.s9533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009533.1 Hibiscus syriacus cultivar Beakdansim tig00116235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53251

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5949--6033	32	2.8	29	79	11	98	21	36	27	15	1.93
6081--6212	32	4.2	32	91	3	196	18	37	30	14	1.90
6079--6212	63	2.1	64	87	4	200	17	36	31	14	1.90
6266--6369	31	3.4	31	65	21	83	13	41	32	12	1.82
6259--6392	62	2.1	63	93	5	236	13	39	35	11	1.80
6427--6549	30	4.0	30	85	5	156	19	36	28	15	1.92
6427--6556	32	4.2	31	86	3	154	18	36	29	15	1.91
6020--6660	344	1.9	345	95	1	1160	17	35	34	12	1.88
6324--6705	95	4.1	95	71	11	327	17	34	35	12	1.88
14863--14950	31	2.8	31	80	3	104	20	37	27	14	1.92
14997--15127	32	4.2	32	87	8	180	18	37	29	14	1.90
14997--15127	31	4.2	31	90	4	183	18	37	29	14	1.90
14995--15127	63	2.1	63	88	2	205	18	36	30	14	1.90
15211--15307	30	3.1	31	66	16	92	13	40	37	9	1.77
15174--15307	62	2.1	63	98	1	261	13	39	36	10	1.79
15020--15440	157	2.7	157	81	5	521	17	35	33	13	1.89
15342--15472	32	4.2	32	83	6	160	18	36	29	16	1.92
14936--15588	345	1.9	342	93	2	1121	17	34	34	13	1.89
15237--15619	93	4.1	94	70	13	297	17	34	35	13	1.88
23805--23892	31	2.8	31	80	3	104	20	37	27	14	1.92
23939--24070	32	4.2	32	91	3	196	18	37	30	14	1.90
23937--24070	63	2.1	64	87	4	200	17	36	31	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24154--24251	31	3.1	31	66	13	92	13	39	37	9	1.76
24034--24323	158	1.8	158	89	4	460	15	35	36	12	1.85
24117--24251	63	2.1	63	98	0	261	13	39	37	10	1.79
24003--24228	95	2.4	94	70	11	235	15	37	34	12	1.86
24286--24419	32	4.2	32	89	0	187	17	35	30	15	1.92
23878--24537	349	1.9	347	95	0	1185	17	34	34	13	1.88
24180--24568	95	4.1	95	72	9	369	16	33	36	12	1.87
32737--32825	33	2.8	32	82	1	115	20	37	28	14	1.92
32872--33004	32	4.2	32	93	1	205	18	36	30	14	1.90
33051--33183	62	2.1	62	98	0	257	13	39	36	10	1.79
33062--33160	31	3.2	31	64	16	87	14	43	31	11	1.80
33218--33350	32	4.2	32	87	2	178	18	36	30	15	1.92
33218--33350	63	2.1	65	85	2	180	18	36	30	15	1.92
32811--33467	346	1.9	346	95	0	1181	17	34	34	13	1.89
33113--33498	94	4.1	95	71	11	326	17	34	35	12	1.88
41627--41714	32	2.8	32	78	5	106	20	37	27	14	1.92
41761--41893	32	4.2	32	93	1	205	18	36	30	14	1.90
41977--42071	29	3.1	30	66	19	88	13	41	35	9	1.77
41941--42071	61	2.1	62	98	1	255	13	40	35	10	1.80
42106--42238	32	4.2	32	88	1	178	18	36	30	15	1.92
42003--42393	94	4.1	94	71	18	319	17	34	35	13	1.88
50520--50608	33	2.8	32	82	1	115	20	37	28	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50655--50784	31	4.2	32	91	3	178	18	37	29	14	1.90
50653--50784	63	2.1	62	84	6	178	18	37	30	14	1.90
50831--50960	60	2.1	63	90	8	216	13	40	34	10	1.80
50753--51031	153	1.8	154	87	5	422	16	36	35	12	1.86
50995--51126	31	4.2	31	86	3	165	18	36	29	15	1.92
50892--51275	95	4.1	94	71	8	341	17	34	35	13	1.88

Tables:   1

The End!