genome.fa.s9538.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009538.1 Hibiscus syriacus cultivar Beakdansim tig00116331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68678

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44--123	33	2.5	32	88	6	110	15	31	36	17	1.91
203--288	33	2.6	34	88	3	122	15	29	34	20	1.93
19--587	165	3.4	167	92	3	936	16	33	32	17	1.93
373--453	33	2.5	33	87	2	110	16	29	33	20	1.94
8872--9061	33	5.6	33	79	12	206	15	31	35	17	1.91
8853--9069	105	2.1	106	95	2	393	16	33	34	16	1.91
9145--9229	33	2.6	33	88	1	118	15	30	34	20	1.93
9312--9393	33	2.6	32	86	5	112	17	29	32	20	1.95
8958--9531	168	3.4	168	93	3	969	16	33	32	17	1.92
17374--17406	11	3.0	11	90	0	57	15	36	39	9	1.79
17790--17976	32	5.6	32	77	12	178	16	31	34	17	1.92
17790--17978	33	5.6	33	77	13	188	15	31	34	17	1.92
17769--17986	105	2.1	104	96	0	400	16	33	33	16	1.91
18060--18144	33	2.6	33	90	1	127	15	29	35	20	1.93
17874--18448	168	3.4	169	95	1	1034	16	33	32	17	1.92
18231--18312	33	2.5	33	88	2	112	17	30	34	18	1.94
26341--26373	11	3.0	11	90	0	57	15	36	39	9	1.79
26764--26954	33	5.6	33	77	11	197	15	31	35	17	1.91
26742--26962	106	2.1	106	97	0	415	15	33	34	16	1.91
26848--27429	169	3.4	170	96	0	1051	16	33	33	17	1.92
27039--27123	33	2.6	33	90	1	127	15	29	35	20	1.93
27211--27292	33	2.5	33	88	2	112	17	30	34	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35348--35380	11	3.0	11	90	0	57	15	36	39	9	1.79
35770--35957	32	5.6	32	75	14	162	15	30	35	17	1.92
35748--35967	105	2.1	106	96	0	406	15	33	34	16	1.91
35878--35959	33	2.5	33	92	2	130	15	30	36	17	1.91
35853--36432	168	3.4	170	95	1	1033	16	32	33	17	1.92
36043--36127	33	2.6	33	90	1	127	15	29	35	20	1.93
36212--36293	33	2.6	32	84	5	103	17	28	34	20	1.95
44349--44381	11	3.0	11	90	0	57	15	36	39	9	1.79
44771--44961	33	5.6	33	77	11	197	15	31	35	17	1.91
44749--44969	106	2.1	106	97	0	415	15	33	34	16	1.91
45046--45130	33	2.6	33	90	1	127	15	29	35	20	1.93
45215--45296	33	2.6	32	84	5	103	17	28	34	20	1.95
44855--45435	169	3.4	170	95	1	1042	16	33	33	17	1.92
53316--53348	11	3.0	11	90	0	57	15	36	39	9	1.79
53734--53920	33	5.6	33	78	12	195	16	31	35	17	1.91
53712--53928	104	2.1	103	93	3	373	16	33	34	16	1.91
54004--54088	33	2.6	33	90	1	127	15	29	35	20	1.93
53816--54388	163	3.4	163	93	3	923	16	33	32	17	1.92
54170--54251	33	2.5	33	88	2	112	17	30	34	18	1.94
53816--54412	331	1.8	328	91	4	984	16	33	32	17	1.92
68143--68333	33	5.6	33	76	12	181	15	31	35	17	1.91
68122--68341	106	2.1	105	94	2	388	15	33	34	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68416--68499	33	2.6	32	90	3	125	15	29	34	20	1.93
68227--68678	168	2.7	167	94	1	773	17	33	32	16	1.92
68584--68665	33	2.6	32	86	5	112	17	29	32	20	1.95

Tables:   1

The End!