genome.fa.s9544.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009544.1 Hibiscus syriacus cultivar Beakdansim tig00116396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64615

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60--187	31	4.1	32	83	5	156	15	31	35	17	1.92
61--184	61	2.0	62	82	4	153	15	30	35	18	1.92
222--344	64	2.0	61	93	4	210	10	33	42	13	1.79
400--529	32	4.2	32	90	2	176	14	29	37	18	1.90
91--506	156	2.7	157	76	10	442	13	33	35	17	1.89
576--659	31	2.7	31	78	9	91	15	26	38	20	1.92
13352--13738	94	4.1	94	72	8	370	12	35	34	17	1.88
13500--13633	32	4.2	32	88	1	187	15	30	35	17	1.92
13691--13794	32	3.3	32	68	16	101	11	33	41	13	1.80
13668--13800	62	2.1	62	97	1	248	10	36	39	13	1.79
13596--13884	157	1.8	157	89	4	458	12	36	35	15	1.85
13848--13980	32	4.2	32	91	2	196	14	30	36	18	1.90
14027--14115	33	2.8	32	82	1	115	14	28	37	20	1.92
22319--22707	95	4.1	95	72	7	383	12	36	33	16	1.87
22468--22601	32	4.2	32	88	1	187	15	30	35	17	1.92
22659--22763	32	3.3	32	68	13	101	11	34	40	13	1.80
22636--22770	63	2.1	63	98	0	261	10	37	39	13	1.79
22636--22733	31	3.1	31	66	13	92	9	37	39	13	1.76
22817--22949	32	4.2	32	91	2	196	14	30	36	18	1.90
22500--22920	158	2.7	159	80	7	532	13	34	34	17	1.89
22996--23084	33	2.8	32	82	1	115	14	28	37	20	1.92
36845--37232	95	4.1	94	71	8	363	13	36	33	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36994--37127	32	4.2	32	87	1	178	16	30	35	17	1.93
37185--37288	31	3.3	32	68	15	92	11	34	40	13	1.81
37162--37295	62	2.1	63	97	1	252	10	37	38	13	1.79
37090--37378	157	1.8	158	88	5	442	12	36	35	15	1.85
37342--37474	32	4.2	32	91	2	196	14	30	36	18	1.90
37521--37609	33	2.8	32	82	1	115	14	28	37	20	1.92
45949--46082	32	4.2	32	88	1	187	15	30	35	17	1.92
46140--46241	31	3.4	31	68	18	97	11	35	40	12	1.80
46117--46248	61	2.1	62	97	1	248	10	37	38	12	1.78
46045--46330	155	1.8	156	89	5	454	12	37	35	15	1.85
46295--46426	32	4.2	32	92	3	205	14	31	36	18	1.90
46473--46560	33	2.7	31	81	6	113	14	28	36	20	1.92
54708--55094	95	4.1	95	72	9	385	12	36	33	17	1.87
54857--54988	32	4.2	32	84	5	169	15	31	35	18	1.91
54889--55302	157	2.6	157	80	8	493	13	34	34	17	1.89
55023--55156	63	2.1	62	97	1	250	10	37	38	13	1.79
54781--55145	189	1.9	190	86	5	524	12	34	35	17	1.87
55023--55120	31	3.1	31	66	13	92	9	37	39	13	1.76
55046--55149	31	3.3	32	68	15	92	11	34	40	13	1.81
55046--55276	94	2.4	95	70	12	231	12	35	35	15	1.85
55210--55334	32	3.9	32	83	7	155	13	29	36	20	1.91
55380--55468	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!