genome.fa.s9548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009548.1 Hibiscus syriacus cultivar Beakdansim tig00116429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53393

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11089--11477	95	4.1	95	72	7	383	12	36	33	16	1.87
11238--11371	32	4.2	32	88	1	187	15	30	35	17	1.92
11429--11533	32	3.3	32	68	13	101	11	34	40	13	1.80
11406--11540	63	2.1	63	98	0	261	10	37	39	13	1.79
11406--11503	31	3.1	31	66	13	92	9	37	39	13	1.76
11334--11622	157	1.8	158	88	5	451	12	36	35	15	1.85
11586--11718	32	4.2	32	91	2	196	14	30	36	18	1.90
11270--11689	158	2.7	159	80	8	523	13	34	34	17	1.89
11270--11853	158	3.6	155	75	10	446	13	34	34	17	1.90
11765--11853	33	2.8	32	82	1	115	14	28	37	20	1.92
20033--20217	94	2.0	95	91	1	300	11	36	35	16	1.86
20181--20312	32	4.2	32	85	4	169	15	30	36	18	1.91
20179--20312	63	2.1	64	83	5	173	14	29	36	18	1.91
20347--20479	62	2.1	62	97	2	250	10	36	39	13	1.79
20526--20658	32	4.2	32	91	2	196	14	30	36	18	1.90
20705--20793	33	2.8	32	82	1	115	14	28	37	20	1.92
33786--33914	31	4.2	32	80	11	142	15	29	37	17	1.91
33971--34075	32	3.3	32	68	13	101	11	34	40	13	1.80
33948--34082	63	2.1	63	98	0	261	10	37	39	13	1.79
33948--34045	31	3.1	31	66	13	92	9	37	39	13	1.76
34129--34261	32	4.2	32	89	6	200	13	31	36	18	1.89
34129--34259	62	2.1	63	88	5	194	13	30	37	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33818--34236	158	2.7	156	79	9	487	13	34	35	17	1.88
34306--34392	32	2.7	31	79	8	104	14	27	36	20	1.92
42549--42935	95	4.1	95	71	8	365	12	35	34	17	1.88
42698--42830	32	4.2	32	86	3	178	15	30	36	18	1.92
42888--42991	32	3.3	32	68	16	101	11	33	41	13	1.80
42865--42998	62	2.1	63	98	1	261	10	36	39	13	1.79
42865--42961	31	3.1	31	66	16	92	9	37	40	13	1.77
42793--43078	157	1.8	154	87	6	425	12	36	36	15	1.85
43061--43177	32	3.6	32	87	10	173	15	29	35	19	1.93
43061--43176	35	3.5	35	90	6	172	15	29	35	19	1.93
42580--43238	347	1.9	346	93	2	1135	13	34	34	17	1.89
43227--43311	32	2.7	32	86	0	116	15	25	37	21	1.92

Tables:   1

The End!