genome.fa.s9549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009549.1 Hibiscus syriacus cultivar Beakdansim tig00116435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73112

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3894--3982	33	2.8	32	76	8	99	21	37	26	14	1.92
4029--4161	32	4.2	32	93	1	205	18	36	30	14	1.90
4208--4339	62	2.1	62	97	2	248	13	40	35	10	1.79
4125--4410	156	1.8	155	87	6	427	15	36	35	12	1.85
4244--4345	32	3.3	31	67	16	93	13	40	36	9	1.78
4272--4644	92	4.0	92	70	17	311	17	34	34	13	1.89
4373--4502	33	3.9	34	85	5	176	18	34	30	16	1.93
4373--4508	32	4.2	32	85	4	173	17	35	30	16	1.92
18414--18502	33	2.8	32	82	1	115	20	37	28	14	1.92
18549--18681	32	4.2	32	93	1	205	18	36	30	14	1.90
18728--18860	62	2.1	63	97	2	252	13	39	36	10	1.79
18645--18932	157	1.8	156	88	5	447	15	36	36	12	1.85
18895--19027	32	4.2	32	89	1	187	18	35	30	15	1.92
18895--19027	65	2.1	63	87	2	185	18	35	30	15	1.92
18488--19145	346	1.9	347	95	0	1185	17	34	34	13	1.89
18791--19184	95	4.2	94	72	17	325	17	34	35	12	1.88
27379--27467	33	2.8	32	82	1	115	20	37	28	14	1.92
27514--27646	32	4.2	32	93	1	205	18	36	30	14	1.90
27730--27827	31	3.1	31	66	13	92	13	39	37	9	1.76
27693--27827	63	2.1	63	98	0	261	13	39	37	10	1.79
27578--27804	95	2.4	94	71	10	244	15	37	34	12	1.85
27610--27899	158	1.8	158	89	4	460	15	35	36	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27862--27995	32	4.2	32	89	0	187	17	35	30	15	1.92
27756--28144	95	4.1	95	72	9	369	16	33	36	12	1.87
27453--28113	349	1.9	348	95	0	1196	17	34	34	13	1.88
36317--36405	33	2.8	32	82	1	115	20	37	28	14	1.92
36455--36578	32	4.0	31	83	12	157	17	37	29	14	1.90
36450--36577	61	2.1	61	86	5	188	17	38	29	14	1.90
36623--36752	61	2.1	61	95	4	237	13	40	34	10	1.80
36659--36756	30	3.3	29	64	22	76	13	41	34	10	1.78
36785--36917	32	4.2	32	87	2	169	17	36	30	16	1.92
36785--36917	63	2.1	65	85	2	180	17	36	30	16	1.92
36885--37061	92	1.9	92	86	4	250	16	35	35	12	1.87
56143--56231	33	2.8	32	82	1	115	20	37	28	14	1.92
56278--56409	32	4.2	32	93	2	205	18	36	31	14	1.90
56461--56567	32	3.4	32	67	20	91	13	40	35	11	1.80
56456--56590	63	2.1	63	95	2	245	13	38	37	10	1.79
56342--56567	95	2.4	93	70	11	233	15	36	35	12	1.86
56374--56662	158	1.8	156	88	6	440	15	35	37	12	1.85
56625--56758	32	4.2	32	89	0	187	17	35	30	15	1.92
56519--56907	95	4.1	95	72	9	369	16	33	36	12	1.87
65083--65170	31	2.8	31	82	1	113	20	37	28	13	1.91
65217--65329	32	3.6	32	93	3	185	20	35	29	15	1.93
65388--65518	60	2.1	62	93	5	223	12	38	38	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65312--65590	153	1.8	150	83	11	372	15	34	37	12	1.85
65553--65685	32	4.2	32	89	1	187	18	35	30	15	1.92
65553--65685	65	2.1	63	87	2	185	18	35	30	15	1.92

Tables:   1

The End!