genome.fa.s9560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009560.1 Hibiscus syriacus cultivar Beakdansim tig00116581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73739

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7261--7620	94	3.9	92	69	16	292	13	36	33	16	1.88
7387--7518	32	4.2	32	88	3	187	15	31	34	18	1.92
7387--7518	65	2.1	62	87	4	183	15	31	34	18	1.92
7573--7675	31	3.4	31	68	16	97	11	34	39	13	1.81
7561--7682	62	2.0	62	98	0	235	10	35	40	13	1.80
7481--7762	153	1.8	155	87	7	423	12	37	35	15	1.85
7710--7751	22	1.9	22	85	0	57	9	38	38	14	1.78
7726--7860	32	4.2	32	91	2	200	14	31	36	17	1.90
7905--7993	33	2.8	32	82	1	115	14	28	37	20	1.92
20780--20913	32	4.2	32	88	1	187	15	30	35	17	1.92
20969--21069	30	3.4	30	66	17	84	11	35	38	13	1.82
20948--21076	61	2.2	59	92	5	215	10	38	36	13	1.80
21138--21251	32	3.6	32	94	3	194	14	28	35	20	1.92
21138--21385	64	3.8	65	69	18	197	15	31	33	20	1.93
21298--21385	31	2.8	32	78	5	106	14	28	36	20	1.92
29512--29895	94	4.1	94	71	8	350	13	36	32	17	1.88
29659--29790	32	4.2	32	87	3	178	15	31	34	18	1.92
29848--29952	31	3.3	32	67	16	85	11	34	40	14	1.82
29825--29959	62	2.1	64	95	2	247	10	37	38	14	1.80
29584--29948	189	1.9	189	85	6	499	12	34	34	17	1.88
30005--30137	32	4.2	32	91	2	196	14	30	36	18	1.90
29690--30108	158	2.7	158	79	9	496	13	34	34	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30183--30270	33	2.8	32	80	3	106	14	28	36	20	1.92
38597--38729	32	4.2	32	88	2	187	15	30	35	18	1.92
38597--38729	65	2.1	63	87	2	185	15	30	35	18	1.92
38787--38890	31	3.3	32	68	15	92	11	34	40	13	1.81
38764--38897	62	2.1	63	97	1	252	10	37	38	13	1.79
38522--38886	189	1.9	190	85	6	508	12	34	35	17	1.87
38944--39073	31	4.2	31	90	4	190	14	31	35	18	1.91
38628--39045	157	2.6	157	79	9	508	13	34	34	17	1.89
39120--39208	33	2.8	32	82	1	115	14	28	37	20	1.92
47379--47765	94	4.1	95	71	8	365	12	36	33	17	1.88
47527--47659	32	4.2	32	88	2	187	15	30	35	18	1.92
47527--47659	65	2.1	63	87	2	185	15	30	35	18	1.92
47694--47827	63	2.1	62	97	1	250	10	37	38	13	1.79
47694--47791	31	3.1	31	66	13	92	9	37	39	13	1.76
47451--47816	190	1.9	190	85	6	510	12	34	35	17	1.87
47717--47820	31	3.3	32	68	15	92	11	34	40	13	1.81
47717--47947	94	2.4	95	71	11	247	12	35	35	15	1.86
47874--48004	32	4.2	32	90	5	196	14	31	35	18	1.91
47717--48065	188	1.9	188	81	7	431	13	35	34	17	1.88
47558--47975	157	2.7	158	80	8	519	13	34	34	17	1.89
47874--48139	63	4.0	64	71	18	213	15	32	33	19	1.92
47558--48139	157	3.6	156	75	12	450	13	34	33	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47426--48065	347	1.9	343	96	1	1133	12	35	34	17	1.88
48051--48139	33	2.8	32	82	1	115	14	28	37	20	1.92
56441--56574	32	4.2	32	88	1	187	15	30	35	17	1.92
56632--56735	31	3.3	32	68	15	92	11	34	40	13	1.81
56609--56742	62	2.1	63	97	1	252	10	37	38	13	1.79
56537--56824	156	1.8	158	88	5	442	12	36	35	15	1.85
56788--56920	32	4.2	32	91	2	196	14	30	36	18	1.90
56967--57055	33	2.8	32	82	1	115	14	28	37	20	1.92
56833--57105	136	2.0	137	85	5	374	15	32	32	19	1.93
65200--65384	95	2.0	94	92	1	307	11	36	34	16	1.86
65349--65480	32	4.2	32	87	3	178	15	31	34	18	1.92
65534--65637	32	3.3	32	68	16	101	11	33	41	13	1.80
65512--65643	62	2.1	61	95	2	237	10	36	39	13	1.80
65691--65822	32	4.2	32	92	3	205	14	31	36	18	1.90
65869--65957	33	2.8	32	82	1	115	14	28	37	20	1.92

Tables:   1

The End!