genome.fa.s9564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009564.1 Hibiscus syriacus cultivar Beakdansim tig00116806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75890

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7119--7203	33	2.6	33	90	1	127	20	35	29	15	1.93
7288--7476	33	5.6	32	77	12	191	17	35	30	15	1.91
7280--7498	104	2.1	106	95	1	397	16	34	32	15	1.91
6817--7439	169	3.7	164	86	10	748	16	34	32	16	1.92
7111--7547	137	3.2	137	76	13	527	16	33	33	16	1.91
7862--7893	11	2.9	11	95	0	55	9	40	37	12	1.75
16053--16136	32	2.6	33	88	3	118	20	35	28	15	1.93
16221--16409	33	5.6	33	75	13	179	17	35	30	15	1.91
16213--16431	104	2.1	106	95	1	397	16	34	32	15	1.91
15756--16325	169	3.4	168	91	5	937	17	34	32	16	1.92
16254--16562	104	3.1	103	83	9	320	16	34	33	14	1.89
16799--16830	11	2.9	11	95	0	55	9	40	37	12	1.75
24860--24944	33	2.6	33	88	1	118	20	34	29	16	1.94
24723--25303	169	3.4	170	95	1	1042	17	33	33	16	1.92
25029--25112	32	2.6	32	88	3	116	20	35	28	15	1.93
25197--25387	33	5.6	33	77	11	197	17	35	31	15	1.91
25197--25387	65	2.8	66	74	13	197	17	35	31	15	1.91
25189--25409	106	2.1	106	97	0	415	16	34	33	15	1.91
25777--25808	11	2.9	11	95	0	55	9	40	37	12	1.75
33862--33946	33	2.6	33	88	1	118	20	34	29	16	1.94
33725--34306	169	3.4	170	96	0	1051	17	33	33	16	1.92
34031--34115	33	2.6	33	90	1	127	20	35	29	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34200--34390	33	5.6	33	77	11	197	17	35	31	15	1.91
34200--34390	65	2.8	66	74	13	197	17	35	31	15	1.91
34192--34412	106	2.1	106	97	0	415	16	34	33	15	1.91
34782--34813	11	2.9	11	95	0	55	9	40	37	12	1.75
42870--42954	33	2.6	33	88	1	118	20	34	29	16	1.94
42733--43314	169	3.4	170	96	0	1051	17	33	33	16	1.92
43039--43123	33	2.6	33	90	1	127	20	35	29	15	1.93
43208--43398	33	5.6	33	77	11	197	17	35	31	15	1.91
43208--43398	65	2.8	66	74	13	197	17	35	31	15	1.91
43200--43420	106	2.1	106	97	0	415	16	34	33	15	1.91
43788--43819	11	2.9	11	95	0	55	9	40	37	12	1.75
51878--51962	33	2.6	33	88	1	118	20	34	29	16	1.94
51741--52322	169	3.4	170	96	0	1051	17	33	33	16	1.92
52047--52131	33	2.6	33	90	1	127	20	35	29	15	1.93
52216--52406	33	5.6	33	77	11	197	17	35	31	15	1.91
52216--52406	65	2.8	66	74	13	197	17	35	31	15	1.91
52208--52428	106	2.1	106	97	0	415	16	34	33	15	1.91
52798--52829	11	2.9	11	95	0	55	9	40	37	12	1.75
60859--60941	31	2.6	32	83	7	98	20	34	27	16	1.94
60723--61298	167	3.4	169	94	2	1002	17	33	32	16	1.92
61026--61110	33	2.6	33	90	1	127	20	35	29	15	1.93
61195--61382	31	5.6	32	76	13	182	17	36	30	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61293--61382	33	2.8	32	88	3	126	17	35	32	14	1.90
61187--61404	105	2.1	104	94	2	384	16	34	33	15	1.91
61482--61514	16	2.1	16	100	0	66	18	15	42	24	1.88
61784--61815	11	2.9	11	95	0	55	9	40	37	12	1.75
69845--69929	33	2.6	33	88	1	118	20	34	29	16	1.94
69708--70289	169	3.4	170	96	0	1051	17	33	33	16	1.92
70014--70098	33	2.6	33	90	1	127	20	35	29	15	1.93
70183--70373	33	5.6	33	77	11	197	17	35	31	15	1.91
70183--70373	65	2.8	66	74	13	197	17	35	31	15	1.91
70175--70395	106	2.1	106	97	0	415	16	34	33	15	1.91
70763--70794	11	2.9	11	95	0	55	9	40	37	12	1.75

Tables:   1

The End!