genome.fa.s9566.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009566.1 Hibiscus syriacus cultivar Beakdansim tig00116925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  439029

Tables:   1   2   

This is table  1  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198--269	37	2.0	37	91	2	119	23	20	20	34	1.96
2259--2331	3	24.7	3	97	2	139	67	0	0	32	0.91
2641--2678	20	1.9	20	94	0	67	39	5	28	26	1.78
7637--7672	17	2.2	17	90	5	56	47	0	0	52	1.00
14110--14174	25	2.6	25	80	9	71	41	1	0	56	1.08
14097--14173	25	3.1	25	78	10	70	37	2	0	59	1.11
14837--14880	22	2.0	23	82	13	56	45	2	2	50	1.27
15020--15065	16	2.7	18	78	18	53	32	10	2	54	1.47
16105--16216	35	3.2	35	83	2	127	36	0	21	41	1.60
19887--20000	57	2.0	57	98	0	219	28	25	14	32	1.94
23008--23071	26	2.4	26	77	17	69	42	1	3	53	1.26
23398--23443	20	2.2	21	84	3	58	19	2	15	63	1.41
25742--25824	29	2.9	29	94	3	141	16	30	31	21	1.96
28025--28076	27	2.0	27	88	3	79	32	19	13	34	1.90
28126--28338	36	5.9	36	87	4	313	19	23	20	36	1.95
28126--28343	72	3.0	72	95	0	391	18	23	19	37	1.94
29943--29994	27	2.0	27	88	3	79	32	19	13	34	1.90
31732--31844	60	1.9	60	88	3	174	28	11	19	40	1.86
36894--37085	20	9.6	20	85	4	244	34	26	19	19	1.95
37472--37542	33	2.2	33	92	0	115	12	23	15	47	1.80
37622--37727	21	5.6	20	75	16	109	47	18	21	12	1.81
37682--37738	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37675--37754	33	2.4	33	95	0	142	47	22	21	8	1.78
37780--37844	21	3.1	21	82	4	96	10	26	15	47	1.78
37779--37842	20	3.2	20	82	4	92	12	25	15	46	1.81
39035--39059	12	2.1	12	100	0	50	0	28	0	72	0.86
39971--40199	20	11.4	20	85	1	226	19	17	24	37	1.93
40193--40263	21	3.4	20	75	13	54	25	18	22	33	1.96
49694--49795	50	2.0	50	80	0	114	18	28	28	24	1.98
49939--49978	10	4.0	10	84	12	55	32	27	0	40	1.57
50122--50343	111	2.0	111	96	0	408	36	7	10	45	1.68
56080--56210	51	2.6	51	81	3	140	22	27	30	19	1.98
59507--59531	2	12.5	2	100	0	50	52	0	0	48	1.00
59697--59725	15	1.9	15	100	0	58	48	27	6	17	1.72
59870--60238	183	2.0	183	93	2	625	41	3	8	46	1.52
60265--60324	9	6.4	9	78	21	70	40	23	13	23	1.90
60269--60308	11	3.8	11	87	12	66	40	25	15	20	1.90
60265--60313	20	2.5	20	100	0	98	40	24	14	20	1.89
71572--71886	149	2.1	149	94	1	560	27	16	20	34	1.95
71854--71898	23	2.0	23	90	0	72	22	26	26	24	2.00
75100--75260	64	2.5	62	83	10	191	34	16	21	27	1.95
76502--76808	149	2.1	149	95	1	553	28	15	20	35	1.93
76784--76828	23	2.0	23	90	0	72	22	26	26	24	2.00
82614--82652	19	2.2	19	86	9	55	38	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82751--82775	7	3.6	7	100	0	50	68	0	0	32	0.90
94280--94383	51	2.0	51	100	0	208	23	20	25	31	1.98
102256--102326	20	3.2	22	70	23	60	45	2	5	46	1.41
102284--102457	90	2.0	88	89	2	267	46	5	10	37	1.60
106384--106752	20	18.5	20	85	4	458	34	26	18	20	1.96
107426--107472	24	2.0	24	87	8	69	25	14	21	38	1.92
107647--107671	12	2.1	12	100	0	50	72	0	28	0	0.86
109978--110284	19	17.4	19	79	16	358	47	18	20	14	1.83
110006--110284	52	5.2	53	90	5	358	47	17	20	14	1.83
110045--110284	71	3.4	71	83	11	355	47	17	20	15	1.83
109978--110316	142	2.4	137	89	6	497	46	18	20	14	1.83
110313--110414	19	5.6	19	85	12	151	14	23	17	44	1.86
110521--110557	14	2.6	14	91	0	65	45	21	0	32	1.52
110552--110624	12	6.0	12	67	20	53	57	16	1	24	1.47
110538--110610	38	1.9	38	97	0	137	53	16	1	28	1.51
112485--112541	14	3.7	14	77	20	60	45	22	21	10	1.82
112466--112558	33	2.8	33	95	0	168	47	21	20	10	1.80
112429--112563	19	7.6	19	76	16	128	45	23	19	11	1.82
112559--112687	19	7.3	19	75	17	125	8	17	28	45	1.77
112559--112650	33	2.8	33	93	3	150	7	18	28	45	1.76
112731--113110	93	4.1	93	99	0	753	46	18	12	22	1.83
112731--113110	185	2.0	186	99	0	753	46	18	12	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114814--114903	14	5.7	14	74	23	81	42	23	25	8	1.83
114806--114920	33	3.5	33	95	0	212	45	20	24	9	1.81
114813--114925	19	6.8	18	72	23	88	43	22	24	9	1.83
114937--114991	14	3.6	14	73	21	56	9	27	23	40	1.85
115112--115182	33	2.2	33	94	0	124	47	16	23	11	1.79
115364--115418	22	2.5	22	81	0	74	20	16	40	23	1.91
115564--115757	20	9.6	20	82	5	212	19	19	25	36	1.95
115566--115737	60	2.8	60	83	0	236	19	18	26	35	1.95
115750--115826	21	3.7	20	70	13	57	27	16	23	32	1.96
115812--115863	20	2.6	20	96	0	95	21	13	26	38	1.90
123704--123764	30	2.0	30	83	6	77	29	21	9	39	1.85
129590--129623	15	2.3	15	94	0	59	55	0	0	44	0.99
137303--137460	21	7.8	20	72	7	86	38	25	17	18	1.92
137427--137620	20	9.6	20	81	5	212	35	25	19	19	1.96
137427--137620	60	3.2	60	82	0	244	35	25	19	19	1.96
138001--138071	33	2.2	33	89	0	106	11	23	16	47	1.79
138151--138258	21	5.7	20	74	15	95	45	19	24	11	1.82
138151--138227	21	3.8	20	82	5	100	45	16	24	12	1.83
138150--138227	41	1.9	41	97	0	147	44	16	25	12	1.83
138163--138269	19	5.7	19	71	16	80	46	20	22	10	1.80
138265--138362	19	5.7	19	70	22	81	10	24	22	42	1.84
138287--138376	14	5.7	14	74	23	81	8	25	23	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138270--138384	33	3.5	33	95	0	212	9	24	20	45	1.81
140081--140461	93	4.1	93	98	0	735	22	12	18	45	1.83
140505--140633	19	7.3	19	75	17	125	45	28	17	8	1.77
140541--140633	33	2.8	32	91	4	150	46	27	18	7	1.76
140505--140633	52	2.5	52	74	14	140	45	28	17	8	1.77
140629--140763	19	7.6	19	73	16	119	11	18	23	46	1.81
140651--140707	14	3.7	14	77	20	60	10	21	22	45	1.82
140634--140726	33	2.8	33	93	0	159	10	19	21	48	1.79
142686--142721	14	2.6	14	95	0	63	33	0	22	44	1.53
142828--142963	19	7.6	19	78	17	166	43	16	24	15	1.87
142828--142962	53	2.6	53	95	1	236	42	17	24	15	1.87
142828--142957	33	3.8	32	70	22	111	44	16	23	14	1.85
142953--143101	33	4.3	33	71	18	133	13	24	17	44	1.85
142972--143101	19	7.3	19	77	17	154	13	23	16	45	1.84
142953--143101	52	2.8	52	97	1	280	13	24	17	44	1.85
143160--143257	19	5.4	19	84	13	143	45	17	22	14	1.84
143160--143276	53	2.2	53	98	1	227	44	17	23	13	1.85
145592--145616	12	2.1	12	100	0	50	0	28	0	72	0.86
145791--145837	24	2.0	24	87	8	69	38	21	14	25	1.92
146533--146769	20	11.9	20	86	1	260	19	18	24	37	1.94
146756--146838	21	4.0	21	73	6	78	25	16	24	33	1.96
146736--146834	42	2.4	43	77	11	100	21	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147685--147756	23	3.1	23	81	0	90	56	22	13	6	1.61
148243--148288	16	2.6	19	76	13	53	47	8	2	41	1.46
149992--150052	32	1.9	32	89	0	95	40	22	11	24	1.87
165967--166014	19	2.5	20	79	6	62	66	2	2	29	1.14
171650--171696	2	23.5	2	82	8	60	53	2	0	44	1.12
173482--173515	17	2.1	16	88	5	50	14	17	5	61	1.52
179756--179823	31	2.2	31	89	5	102	17	17	16	48	1.81
182732--182810	37	2.1	37	97	0	149	30	17	16	35	1.92
189046--189078	14	2.3	15	89	5	50	57	0	9	33	1.30
191653--191687	18	1.9	18	88	0	52	28	17	0	54	1.43

Tables:   1   2