genome.fa.s9566.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009566.1 Hibiscus syriacus cultivar Beakdansim tig00116925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  439029

Tables:   1   2   

This is table  2  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206298--206353	28	2.0	28	82	6	69	30	3	25	41	1.72
215550--215660	49	2.2	50	80	7	136	25	8	11	54	1.63
217934--217971	20	1.9	20	100	0	76	36	10	26	26	1.89
217934--217983	20	2.7	18	88	11	59	40	8	26	26	1.83
218158--218193	2	18.5	2	94	5	65	50	0	0	50	1.00
223187--223229	21	2.0	22	86	13	63	39	0	0	60	0.97
223641--223723	40	2.1	39	84	8	107	46	1	1	50	1.16
228919--229387	239	2.0	230	96	3	857	29	21	16	33	1.95
229856--229934	40	2.0	40	97	0	149	41	26	7	24	1.81
230566--230622	29	2.0	29	86	3	80	43	0	1	54	1.10
234436--234739	36	8.4	36	92	0	491	32	23	26	17	1.97
239822--239863	18	2.4	17	92	4	66	40	14	19	26	1.89
241881--241923	15	3.1	14	81	18	54	69	6	9	13	1.35
241882--241926	12	3.3	13	85	14	56	73	6	8	11	1.25
241995--242039	19	2.4	19	85	3	56	44	2	0	53	1.13
242508--242591	41	2.2	40	85	8	111	50	3	2	44	1.32
246368--246405	16	2.4	16	90	0	58	71	5	2	21	1.19
246807--246878	28	2.6	28	91	6	112	31	26	20	20	1.98
264859--264931	23	3.5	22	75	14	73	23	31	24	20	1.98
264863--264911	23	2.2	22	92	3	80	20	34	24	20	1.96
268412--268449	18	2.2	18	85	4	51	31	7	5	55	1.51
268869--268929	27	2.3	27	97	0	113	16	45	11	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280941--281287	172	2.0	172	91	0	559	29	11	21	37	1.88
285814--285862	23	2.1	23	85	7	64	59	12	2	26	1.44
287649--287703	25	2.2	25	100	0	110	23	21	23	30	1.99
288198--288240	14	3.0	15	83	10	54	76	6	0	16	0.99
291471--291519	23	2.1	23	88	7	73	59	10	2	28	1.41
294728--294887	65	2.5	65	83	10	188	30	18	21	30	1.97
297518--297614	44	2.2	44	87	7	135	26	20	24	27	1.99
301497--301717	117	1.9	117	80	5	259	28	13	9	49	1.71
302989--303198	65	3.2	64	77	9	221	28	18	22	30	1.97
308346--308371	13	2.0	13	100	0	52	38	0	30	30	1.58
317895--317937	4	10.8	4	87	0	50	55	2	13	27	1.51
317895--317949	12	4.7	12	77	8	51	52	1	16	29	1.54
321619--321662	20	2.2	20	100	0	88	31	31	9	27	1.88
322637--322673	17	2.1	19	85	10	51	56	0	0	43	0.99
323319--323344	3	8.7	3	100	0	52	34	0	0	65	0.93
323282--323453	84	2.0	84	95	3	308	37	9	9	43	1.70
326879--326905	2	13.5	2	100	0	54	48	0	0	51	1.00
327263--327306	2	22.5	2	90	4	72	52	0	2	45	1.13
330487--330536	25	2.0	25	88	0	73	34	14	20	32	1.92
334713--334761	14	3.5	13	86	10	62	55	20	10	14	1.68
334723--334768	14	3.3	14	90	6	67	50	23	15	10	1.75
335314--335353	21	1.9	21	89	0	62	67	0	12	20	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335855--335928	37	2.0	37	100	0	148	32	5	2	59	1.34
341123--342312	397	3.0	397	94	1	2070	29	16	14	39	1.88
347496--347535	16	2.5	16	87	0	53	25	40	12	22	1.89
347743--347815	28	2.6	29	78	12	80	46	1	8	43	1.42
349166--349243	29	2.6	31	78	6	81	62	5	11	20	1.47
350477--350509	17	1.9	17	88	11	50	60	6	6	27	1.44
353836--353890	2	28.5	2	85	7	78	50	0	0	49	1.00
353836--353897	22	2.9	22	85	4	65	50	1	1	46	1.20
355667--355732	22	3.0	22	97	2	123	48	1	4	45	1.32
357418--357595	60	3.0	59	78	3	169	32	20	4	42	1.72
357722--357890	60	2.8	58	77	11	155	37	3	25	33	1.73
362208--362267	7	8.7	7	73	10	52	45	30	3	21	1.68
362214--362245	13	2.4	14	94	5	57	40	28	6	25	1.79
362177--362271	14	6.8	14	70	9	59	45	28	2	24	1.65
362316--362341	7	3.7	7	100	0	52	57	15	0	26	1.38
362345--362439	49	1.9	49	81	8	113	49	24	1	25	1.57
365050--365105	17	3.3	17	94	0	103	23	16	30	30	1.96
365090--365177	11	7.6	11	72	9	68	27	25	22	25	2.00
365089--365178	23	3.9	23	91	1	126	26	25	22	25	2.00
365189--365326	72	1.9	71	81	11	165	20	16	24	38	1.93
365708--365782	30	2.5	30	80	2	80	25	0	18	56	1.42
366367--366407	21	1.9	22	85	14	59	75	4	2	17	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375697--375729	11	3.0	11	100	0	66	0	18	54	27	1.44
375877--375962	34	2.5	34	96	1	154	59	0	0	40	0.97
377917--378050	30	4.5	30	83	4	139	18	35	27	18	1.95
377902--378050	60	2.5	58	76	9	158	20	32	28	18	1.96
381388--381416	14	2.1	14	100	0	58	65	0	13	20	1.26
381387--381419	14	2.5	13	86	13	50	69	0	12	18	1.18
382943--382989	14	3.4	13	83	16	51	80	2	4	12	0.94
382958--383008	19	2.7	18	84	9	66	78	3	3	13	1.03
382958--382996	18	2.1	18	90	4	60	79	5	5	10	1.04
383108--383157	26	1.9	26	84	8	66	60	8	4	28	1.43
384332--384378	12	3.8	12	80	11	51	72	2	4	21	1.12
384389--384443	28	2.0	28	92	0	92	38	9	3	49	1.52
384418--384792	37	10.6	35	72	15	123	44	5	4	46	1.45
384415--384825	104	3.9	101	76	11	310	43	5	4	46	1.47
384500--384849	37	9.7	35	75	18	274	42	5	5	46	1.49
384500--384849	74	4.8	72	82	10	383	42	5	5	46	1.49
398562--398686	30	4.2	30	86	5	173	17	34	28	19	1.95
403294--403574	42	6.8	42	71	7	171	34	18	20	26	1.96
403297--403574	41	6.7	41	68	11	102	34	18	20	26	1.96
403337--403574	83	2.9	83	82	1	271	34	18	21	25	1.96
405242--405272	2	15.5	2	100	0	62	51	0	0	48	1.00
411857--411942	21	4.1	21	84	3	102	37	19	41	1	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411865--411957	21	4.4	21	83	4	98	38	19	40	1	1.59
412293--412516	43	5.2	43	73	13	158	32	21	18	27	1.97
412582--412653	15	4.9	15	73	20	53	9	18	27	44	1.81
414393--414425	17	1.9	17	100	0	66	0	18	3	78	0.87
414919--414966	3	16.3	3	95	4	89	64	0	0	35	0.94
415094--415942	116	7.4	116	93	2	1328	29	20	13	35	1.91
416703--417177	83	5.7	83	93	1	812	36	22	13	26	1.92
416705--417177	165	2.9	165	97	1	869	36	22	13	27	1.92
416703--417177	248	1.9	248	94	0	835	36	22	13	26	1.92
418207--418270	8	8.2	8	80	13	80	0	14	0	85	0.59
418208--418273	14	4.5	15	85	12	75	0	15	0	84	0.61
418229--418270	10	4.2	10	88	11	68	0	9	0	90	0.45
418207--418273	25	2.7	24	86	4	89	0	14	0	85	0.61
430503--430533	16	1.9	16	93	0	53	0	16	3	80	0.83
431029--431081	3	17.7	3	96	0	97	64	0	1	33	1.05
437294--437416	30	4.1	30	82	6	124	20	30	27	21	1.98
437279--437416	60	2.3	60	76	9	138	21	28	28	21	1.98
438560--438681	30	4.1	30	81	4	131	16	32	29	21	1.95

Tables:   1   2

The End!