genome.fa.s9568.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009568.1 Hibiscus syriacus cultivar Beakdansim tig00116927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  696633

Tables:   1   2   3   

This is table  3  of  3  ( 335 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570042--570117	28	2.7	28	97	0	143	47	26	0	26	1.52
570055--570105	4	13.8	4	76	15	56	47	23	0	29	1.52
570530--570773	105	2.4	104	80	8	275	31	18	11	38	1.87
570719--570837	36	3.4	34	79	6	114	30	20	12	36	1.90
570737--570838	36	2.9	36	82	4	129	33	19	11	35	1.88
570944--571054	29	4.0	29	78	12	124	29	8	13	48	1.71
571051--571153	52	2.0	53	94	1	181	32	13	18	35	1.90
570997--571783	140	5.6	140	97	0	1461	29	12	16	42	1.84
571141--571195	26	2.1	26	86	6	76	32	7	12	47	1.69
571191--571293	52	2.0	53	94	1	181	32	13	18	35	1.90
571281--571335	26	2.1	26	86	6	76	32	7	12	47	1.69
571331--571433	52	2.0	53	94	1	181	32	13	18	35	1.90
571421--571475	26	2.1	26	86	6	76	32	7	12	47	1.69
571471--571573	52	2.0	53	94	1	181	32	13	18	35	1.90
571561--571615	26	2.1	26	86	6	76	32	7	12	47	1.69
571611--571713	52	2.0	53	94	1	181	32	13	18	35	1.90
571701--571755	26	2.2	25	87	9	76	32	10	10	45	1.74
571673--571842	89	1.9	87	83	9	220	26	11	14	47	1.78
571849--572071	120	1.9	118	80	7	263	30	15	12	42	1.84
571970--572095	63	2.0	63	90	1	200	31	13	11	43	1.79
571969--572328	129	2.8	127	72	9	318	29	16	12	41	1.85
572459--572554	36	2.7	34	79	10	95	30	16	12	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572480--572554	35	2.1	36	85	7	100	36	18	10	34	1.86
572726--572787	28	2.2	28	91	5	99	22	11	14	51	1.74
572743--572807	28	2.3	28	84	5	87	26	13	13	46	1.81
572832--573245	40	9.5	42	74	15	301	23	33	20	22	1.97
572818--573251	129	3.3	129	90	4	658	24	33	19	22	1.97
572818--573112	83	3.4	84	75	15	273	24	33	20	21	1.97
572818--573339	129	4.0	131	88	5	646	24	32	19	23	1.98
573536--573596	9	5.8	10	78	21	63	37	0	0	62	0.96
573536--573584	3	16.7	3	83	12	66	34	0	0	65	0.93
583989--584037	23	2.1	23	88	0	71	20	16	12	51	1.76
583989--584045	23	2.5	23	82	0	60	19	17	12	50	1.77
584329--584355	14	1.9	14	100	0	54	7	14	22	55	1.64
590882--590986	21	5.1	21	66	4	79	20	18	23	38	1.93
590886--590986	41	2.5	41	95	0	175	20	18	22	37	1.94
590915--591036	20	5.9	20	71	12	79	18	20	21	39	1.93
590996--591080	19	4.3	19	76	8	98	18	20	18	42	1.90
590975--591145	60	2.8	61	88	5	240	19	17	22	40	1.91
591015--591106	41	2.2	41	92	3	150	18	16	21	43	1.88
591082--591128	22	2.1	21	92	0	58	19	12	27	40	1.88
591243--591276	6	6.0	6	96	3	54	29	52	17	0	1.45
591776--591838	5	12.2	5	94	1	54	0	19	49	31	1.48
591938--591985	19	2.5	20	96	3	89	41	18	20	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592197--592221	2	12.5	2	100	0	50	48	0	0	52	1.00
594145--594222	34	2.6	28	71	22	77	6	41	8	43	1.62
594162--594235	32	2.2	33	90	4	114	5	39	14	40	1.69
594263--594297	16	2.2	16	94	0	61	0	45	0	54	0.99
594420--594495	24	3.2	24	100	0	152	11	38	28	21	1.89
598482--598533	22	2.4	22	93	0	86	50	9	9	30	1.67
601331--601528	105	1.9	104	83	6	256	28	13	29	27	1.94
601194--601623	225	1.9	225	81	2	515	29	14	29	27	1.95
601436--601968	239	2.2	240	80	3	597	28	16	28	26	1.97
601416--601989	120	4.8	120	77	3	555	28	16	28	27	1.97
601955--602011	18	3.3	18	65	30	52	28	8	35	28	1.87
601947--602056	33	3.3	33	96	0	193	26	9	33	30	1.87
601827--602169	186	1.8	186	81	2	420	27	14	29	28	1.95
614467--614568	32	3.0	34	81	8	109	36	17	22	23	1.95
614491--614554	32	2.0	32	93	0	110	35	17	25	21	1.95
614534--614652	42	2.8	42	84	0	139	35	18	21	25	1.95
619266--619306	8	5.2	8	82	5	57	34	0	29	36	1.58
619387--620120	128	5.7	128	94	0	1299	21	24	20	33	1.97
619387--620120	255	2.9	255	94	0	1290	21	24	20	33	1.97
620524--620624	34	3.0	34	86	0	148	38	3	3	53	1.38
621141--621255	21	5.5	21	83	12	146	23	26	32	18	1.97
621141--621249	42	2.6	42	89	5	168	24	25	31	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623018--623071	17	2.8	20	67	16	51	59	0	0	40	0.98
623018--623094	32	2.2	35	82	11	88	58	0	0	41	0.98
640854--640914	26	2.4	25	83	2	77	32	31	18	18	1.94
641079--641121	23	1.9	23	90	4	70	9	11	39	39	1.74
645825--645896	36	2.0	36	89	5	110	33	5	13	47	1.67
646325--646358	16	2.1	16	94	0	59	32	8	26	32	1.87
661951--662002	24	2.2	24	82	6	61	51	5	7	34	1.54
663078--663115	15	2.3	18	86	13	55	60	5	5	28	1.40
665663--665717	27	2.0	27	82	6	67	65	3	1	29	1.20
668690--668727	14	2.6	15	87	4	51	31	0	2	65	1.06
668841--668999	41	3.6	42	79	13	137	29	1	1	66	1.13
668898--668999	47	2.2	45	88	8	152	31	1	0	66	1.03
668907--669002	13	7.8	13	68	21	64	29	2	0	68	1.01
668918--669065	23	6.3	23	68	14	72	22	5	0	71	1.06
668958--669029	35	2.1	34	82	12	85	19	5	0	75	1.00
668958--669037	33	2.4	33	78	17	78	18	6	0	75	1.01
673169--673288	32	3.8	32	86	2	152	30	14	19	36	1.91
674337--674495	87	1.8	87	91	2	266	33	17	12	35	1.88
674424--674662	101	2.4	102	88	0	345	30	18	12	38	1.87
674563--674635	37	2.0	37	94	0	128	26	19	13	41	1.88
674700--674802	36	2.8	37	86	2	163	27	20	15	36	1.93
674714--674899	102	1.8	102	84	4	259	27	18	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674817--674933	36	3.2	36	85	4	164	26	19	13	40	1.89
676157--676193	2	18.5	2	94	0	65	45	0	0	54	1.00
676156--676198	10	4.2	10	90	3	59	41	0	0	58	0.98
676191--676281	8	10.1	9	73	20	59	16	3	1	79	0.93
676203--676294	26	3.7	24	76	12	78	16	4	1	78	0.97
676191--676282	18	5.0	18	75	18	75	16	3	1	79	0.92
676206--676283	9	9.0	8	78	13	75	16	2	1	79	0.91

Tables:   1   2   3

The End!