genome.fa.s9577.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009577.1 Hibiscus syriacus cultivar Beakdansim tig00116945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  348734

Tables:   1   2   

This is table  2  of  2  ( 214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228758--229287	80	6.4	83	77	6	454	31	23	20	25	1.98
228834--229210	165	2.3	165	79	1	398	31	21	20	25	1.98
228758--229284	245	2.1	247	85	3	713	31	23	20	25	1.98
229329--229424	37	2.6	37	86	3	113	26	20	14	38	1.91
229356--229434	37	2.1	37	92	0	131	29	18	13	37	1.90
230876--230946	32	2.2	32	85	12	92	16	2	4	76	1.07
230910--230948	12	3.1	13	85	14	55	20	0	2	76	0.90
230910--230953	22	2.0	23	86	13	65	18	2	2	77	0.98
237951--237998	18	2.7	18	96	0	87	47	6	0	45	1.27
240636--242661	44	46.0	44	67	7	464	30	20	20	29	1.97
240518--242780	263	8.6	264	90	1	3119	30	20	20	29	1.97
240518--242780	132	17.1	132	90	1	3243	30	20	20	29	1.97
243131--243213	36	2.3	36	95	0	148	39	12	20	27	1.88
243227--243585	36	10.1	36	78	11	287	37	14	20	28	1.91
243227--243475	66	3.7	65	85	7	275	38	12	20	28	1.89
243482--243542	17	3.3	17	67	20	50	39	18	16	26	1.91
243430--243653	39	5.9	38	80	8	228	38	16	17	27	1.91
243430--243653	75	2.9	75	80	10	233	38	16	17	27	1.91
248278--248325	18	2.7	18	100	0	96	47	4	0	47	1.21
251732--251778	21	2.2	21	88	0	67	19	21	21	38	1.94
257725--257870	49	3.0	47	80	8	159	26	11	34	26	1.91
258170--258213	21	2.1	21	95	4	81	13	20	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258544--258612	33	2.1	33	94	0	120	10	23	17	49	1.77
258692--258763	21	3.5	20	75	14	67	50	15	19	15	1.79
258750--258810	32	1.9	31	93	3	104	44	21	24	9	1.82
258751--258803	14	3.5	14	74	18	52	43	20	24	11	1.85
258749--258821	32	2.3	32	85	4	103	45	23	21	9	1.81
258817--258930	19	6.1	19	78	13	103	11	24	18	45	1.82
258866--258930	21	3.1	21	82	4	96	10	26	15	47	1.78
258981--259030	21	2.4	21	82	0	55	28	26	22	24	1.99
260432--260467	14	2.6	14	95	0	63	33	0	22	44	1.53
260558--260698	19	7.8	19	79	17	176	46	16	23	13	1.82
260566--260717	33	4.4	34	75	19	145	44	17	24	13	1.84
260558--260717	53	3.0	53	99	0	313	45	16	24	13	1.83
260707--260966	19	14.7	19	78	17	301	14	21	17	46	1.84
260713--260980	52	5.1	52	89	8	404	13	22	17	46	1.83
260728--260966	71	3.4	69	81	11	256	13	21	17	46	1.83
260730--260980	33	7.2	33	75	14	247	13	21	17	47	1.82
261698--261926	20	11.4	20	87	1	253	19	17	25	36	1.94
261920--261967	20	2.3	20	85	3	69	35	14	22	27	1.93
262517--262570	27	2.0	27	100	0	108	29	3	22	44	1.70
262724--262786	26	2.4	26	84	7	74	47	1	1	49	1.20
264035--264091	26	2.3	25	84	6	71	47	0	0	52	1.00
265242--265280	21	1.9	20	84	5	51	48	2	2	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266369--266408	19	2.1	19	86	9	55	50	10	2	37	1.50
266553--266699	49	3.0	49	88	0	213	25	10	36	26	1.89
267161--267214	27	2.0	27	100	0	108	29	3	22	44	1.70
280402--280468	9	6.6	10	75	20	52	76	0	8	14	1.02
280402--280445	20	2.1	21	91	4	72	81	0	4	13	0.83
281452--282200	55	13.7	55	88	1	1058	27	14	29	28	1.96
285027--285089	26	2.4	26	84	7	74	47	1	1	49	1.20
290710--290769	21	2.9	21	89	0	93	46	20	16	16	1.84
291922--291966	23	2.0	23	86	0	63	26	26	26	20	1.99
292081--292149	25	2.8	25	100	0	138	27	26	28	17	1.97
293705--293865	64	2.5	63	82	8	173	26	21	17	34	1.96
296781--296840	25	2.4	25	83	8	77	70	0	26	3	1.03
296798--296837	16	2.4	17	84	16	57	72	0	27	0	0.85
299020--299400	34	10.9	34	85	4	492	34	21	21	22	1.97
299020--299400	105	3.6	105	94	1	649	34	21	21	22	1.97
299533--299623	42	2.2	41	82	2	110	24	21	24	29	1.99
299728--299843	20	5.7	20	66	9	63	23	23	23	30	1.99
299727--299828	42	2.5	41	85	1	141	23	22	22	31	1.98
299950--300043	42	2.3	41	81	5	109	25	18	22	34	1.96
300158--300259	42	2.5	41	81	1	132	23	21	22	32	1.98
299404--300714	214	6.1	214	90	3	2000	32	15	19	31	1.93
300592--300688	42	2.3	42	92	0	158	23	22	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300614--300681	22	3.2	21	68	16	59	26	19	19	35	1.95
299404--300712	645	2.0	634	89	3	2011	32	15	19	31	1.93
307765--307875	21	5.3	20	80	11	107	41	18	20	18	1.91
310463--310498	5	6.8	5	87	12	54	80	0	19	0	0.71
310454--310499	17	2.8	16	90	9	74	78	0	21	0	0.76
310454--310491	12	3.1	12	85	14	51	76	0	23	0	0.79
312587--312785	36	5.5	36	85	1	238	36	23	19	20	1.95
313168--314696	51	28.8	51	79	9	989	33	18	23	24	1.97
313168--314155	155	6.3	156	86	6	1133	33	19	23	23	1.97
314044--314641	164	3.7	163	75	12	462	32	16	23	27	1.96
314296--314688	55	7.2	55	83	7	435	31	16	24	27	1.96
313157--314742	110	14.9	109	77	11	618	33	18	23	24	1.97
314319--314762	55	8.1	52	77	10	199	31	16	24	27	1.96
313995--314742	109	6.9	109	77	11	368	33	17	23	26	1.96
324344--324491	53	2.8	53	90	2	224	29	29	12	29	1.93
324336--324514	53	3.3	52	78	12	193	26	28	13	30	1.95
324491--325253	51	14.8	51	84	3	868	22	24	19	33	1.97
324497--325254	359	2.1	362	85	2	1035	22	24	19	33	1.97
325635--325824	36	5.2	36	86	1	229	22	18	22	36	1.95
330574--330671	21	4.7	21	80	7	110	14	22	18	44	1.85
335979--336032	27	2.0	27	100	0	108	29	3	22	44	1.70
336186--336248	26	2.4	26	84	7	74	47	1	1	49	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336900--336939	5	7.8	5	91	5	62	20	22	35	22	1.96
337522--337579	26	2.3	26	84	3	73	46	0	0	53	1.00
341100--341687	52	11.3	51	78	10	373	24	24	17	33	1.96
341127--341532	107	3.9	107	80	10	297	25	24	16	33	1.96
341122--341690	51	10.9	51	80	9	537	24	24	17	33	1.97
341683--341911	53	4.3	54	87	3	277	26	26	15	31	1.96

Tables:   1   2

The End!