genome.fa.s9578.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009578.1 Hibiscus syriacus cultivar Beakdansim tig00116946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  651624

Tables:   1   2   3   

This is table  3  of  3  ( 291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585328--585421	33	2.8	33	93	0	161	45	19	20	14	1.85
585393--585455	19	3.3	19	91	4	92	46	23	15	14	1.83
585451--585601	19	8.7	19	64	21	80	13	22	19	43	1.87
585455--585581	33	3.8	33	95	0	227	13	22	18	44	1.85
585476--585563	14	5.6	14	69	23	50	12	22	19	45	1.84
585575--585647	20	3.6	20	68	17	60	24	17	24	32	1.97
588491--588542	21	2.5	20	84	3	59	36	17	23	23	1.95
588573--588689	20	5.8	20	94	0	180	24	27	19	28	1.99
588966--589033	19	3.8	19	77	18	92	13	22	19	45	1.84
588990--589043	14	3.5	14	73	22	54	11	20	22	46	1.82
588971--589063	33	2.8	33	91	1	141	12	19	22	45	1.84
591037--591075	20	2.0	20	94	0	69	33	28	12	25	1.93
591063--591169	20	5.4	20	88	1	144	35	23	25	15	1.94
591043--591168	40	3.2	40	82	3	130	35	24	22	17	1.95
591158--591215	14	3.8	14	71	20	53	51	24	13	10	1.72
591142--591214	33	2.2	33	97	0	137	49	21	16	12	1.78
591142--591229	33	2.7	33	89	3	97	50	23	14	11	1.76
591228--591324	19	5.6	19	67	22	70	15	18	19	46	1.84
591236--591324	33	2.7	33	92	0	133	15	17	19	47	1.83
591309--591363	20	2.8	19	83	8	65	16	23	23	36	1.94
591905--591952	18	2.7	18	93	0	87	14	12	45	27	1.81
593257--593315	20	3.0	20	87	0	73	44	22	18	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593578--593621	22	2.0	22	95	0	79	18	15	45	20	1.85
593788--593925	41	3.4	41	80	2	170	23	15	24	36	1.94
593808--593921	20	5.7	20	78	6	113	23	16	26	33	1.96
593815--593943	41	3.2	41	81	5	111	24	17	24	34	1.96
593916--593966	21	2.4	21	93	0	84	23	17	15	43	1.88
593977--594025	21	2.3	22	79	6	66	36	16	26	20	1.93
596321--596390	34	2.0	37	83	8	92	28	10	14	47	1.76
602523--602582	27	2.1	27	88	11	86	43	0	6	50	1.28
602523--602589	28	2.4	29	83	14	79	47	0	5	46	1.27
603173--603224	20	2.6	20	100	0	104	32	19	25	23	1.97
604279--604364	14	6.0	15	67	20	58	50	2	0	47	1.14
604300--604359	27	2.2	27	100	0	120	50	3	0	46	1.18
608076--608130	26	2.1	26	93	0	92	7	47	25	20	1.75
611261--611653	144	2.8	142	82	4	461	35	17	16	30	1.92
612691--612958	144	1.9	145	83	5	355	38	16	15	30	1.89
615096--615388	146	2.0	147	94	2	518	51	6	21	20	1.70
628031--628071	8	5.1	8	88	8	57	85	0	14	0	0.60
629807--629853	24	2.0	24	83	8	60	42	4	10	42	1.59
631376--631423	18	2.6	18	83	3	60	20	2	2	75	1.02
631352--631425	19	3.9	18	77	7	67	17	4	4	74	1.13
632805--632857	24	2.2	24	96	0	97	39	11	1	47	1.50
634518--634565	24	1.9	26	87	8	73	37	8	10	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634563--634616	17	3.2	17	84	2	65	37	0	5	57	1.22
635889--635925	19	2.0	19	89	5	58	32	2	5	59	1.34
638436--638514	35	2.4	33	83	12	92	39	8	6	45	1.61
639052--639086	17	2.1	17	94	5	63	28	0	0	71	0.86
639052--639091	17	2.6	16	88	11	57	30	0	0	70	0.88
649759--649905	75	2.0	74	82	4	179	59	9	21	9	1.56
649869--649926	6	9.7	6	82	17	68	84	0	12	3	0.74

Tables:   1   2   3

The End!