genome.fa.s9589.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009589.1 Hibiscus syriacus cultivar Beakdansim tig00116968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  660543

Tables:   1   2   3   

This is table  3  of  3  ( 312 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567991--568047	14	3.7	14	72	20	51	47	22	19	10	1.80
567935--568069	19	7.6	19	73	16	110	46	23	19	10	1.80
568065--568212	19	8.3	19	76	15	136	9	17	26	46	1.78
568081--568137	14	3.7	14	77	20	60	10	21	22	45	1.82
568065--568194	33	3.8	33	83	7	152	8	18	26	46	1.77
568260--568728	93	5.1	93	98	0	904	46	18	12	21	1.83
570429--570490	20	3.2	20	79	4	81	43	19	24	12	1.86
570474--570530	14	3.7	14	75	20	60	43	22	24	8	1.81
570427--570547	33	3.5	33	89	6	170	45	20	23	10	1.82
570427--570547	19	6.8	19	70	19	91	45	20	23	10	1.82
570671--570739	33	2.2	32	89	5	104	47	17	23	11	1.80
570921--570975	22	2.5	22	81	0	74	20	16	40	23	1.91
571122--571315	20	9.6	20	79	5	203	19	20	24	35	1.95
571124--571295	60	2.8	60	84	0	236	20	19	25	34	1.96
571121--571436	60	5.2	60	77	8	232	20	18	25	36	1.95
571282--571379	20	4.8	20	77	3	79	21	18	23	36	1.95
571282--571438	61	2.6	60	80	7	176	19	17	25	38	1.93
571282--571438	41	3.9	41	70	14	110	19	17	25	38	1.93
580123--580237	60	1.9	60	89	0	176	41	16	10	31	1.82
580601--580642	2	21.0	2	100	0	84	50	0	0	50	1.00
591649--591700	3	18.0	3	80	7	63	65	1	1	30	1.14
592026--592137	40	2.8	40	95	2	199	25	18	33	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592373--592551	66	2.8	63	75	8	171	37	15	21	25	1.93
592695--592721	1	27.0	1	100	0	54	0	0	0	100	0.00
592992--593070	40	2.0	40	95	2	142	36	11	21	30	1.89
593277--593340	30	2.2	29	78	8	69	51	9	14	25	1.71
593491--593563	36	2.0	36	86	5	103	36	12	10	39	1.78
593574--593644	37	2.0	36	86	5	99	45	8	15	30	1.76
593628--593690	30	2.1	30	94	2	110	39	14	11	34	1.81
593677--593781	53	2.0	53	98	0	201	36	16	14	33	1.89
593792--594059	27	9.8	27	92	2	405	47	14	10	27	1.76
593792--594063	107	2.5	110	90	5	426	47	14	9	27	1.76
594301--594419	36	3.4	36	79	6	102	35	12	21	31	1.90
594414--594610	105	1.9	105	86	2	279	39	11	20	29	1.87
594577--594713	36	3.8	36	79	5	152	36	12	18	32	1.89
596266--596313	12	3.9	12	81	8	53	4	8	10	77	1.12
596267--596329	25	2.6	23	80	14	72	3	9	9	77	1.09
596292--596327	19	1.9	19	88	5	56	2	11	8	77	1.08
598359--598420	32	2.0	32	93	3	108	61	9	16	12	1.56
599936--599979	22	2.0	22	81	0	52	52	15	4	27	1.63
601958--601997	13	2.9	13	85	7	53	2	7	2	87	0.71
602544--602595	3	18.0	3	80	7	63	65	1	1	30	1.14
604188--604299	35	3.2	34	84	5	143	41	20	0	36	1.59
605317--605430	35	3.2	34	86	7	156	33	0	22	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623895--623969	16	5.1	14	80	15	55	40	2	0	57	1.13
623918--623974	2	29.0	2	84	10	73	43	3	1	50	1.29
624006--624068	17	3.5	17	70	19	56	26	6	1	65	1.26
624004--624076	37	2.1	36	87	10	107	26	5	2	65	1.27
624056--624113	31	1.9	29	86	6	80	24	1	1	72	1.03
624038--624188	42	3.6	42	75	12	123	23	4	2	68	1.21
627527--627664	69	2.0	69	90	2	215	36	22	15	26	1.93
628597--628709	32	3.5	32	80	3	111	30	11	19	38	1.87
629334--629557	106	2.1	106	83	0	277	34	24	19	20	1.96
629827--629912	37	2.4	37	86	2	111	25	18	15	40	1.89
629775--630144	102	3.6	101	89	1	569	31	17	12	38	1.87
630045--630117	37	2.0	37	91	0	119	26	17	13	42	1.87
630182--630284	36	2.8	37	91	2	181	27	22	14	35	1.93
630195--630381	102	1.8	102	84	6	254	27	20	12	38	1.90
630299--630415	36	3.2	36	84	7	155	26	19	13	40	1.89
630401--630486	39	2.4	37	83	12	115	38	23	9	29	1.86
630493--630654	84	1.9	85	85	1	227	30	25	19	25	1.98
631666--631736	14	5.0	15	91	3	96	45	0	0	54	0.99
631658--631736	20	3.9	22	90	6	80	41	0	0	58	0.98
631685--631736	2	26.0	2	100	0	104	50	0	0	50	1.00
631848--631890	16	2.6	17	85	7	54	18	4	0	76	0.95
632098--632123	11	2.4	11	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632079--632121	19	2.2	20	80	19	56	18	2	2	76	1.00
632104--632164	26	2.3	28	75	13	67	13	4	6	75	1.16
636200--636333	70	1.9	70	95	0	241	26	13	12	47	1.79
642957--642997	21	1.9	22	90	5	66	14	21	17	46	1.84
655157--655187	15	2.1	15	100	0	62	32	19	12	35	1.90
657830--657877	23	2.1	23	88	0	69	29	0	2	68	1.01

Tables:   1   2   3

The End!