genome.fa.s959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000959.1 Hibiscus syriacus cultivar Beakdansim tig00001918_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83780

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766--847	2	41.5	2	92	2	139	50	1	1	47	1.16
2485--2540	27	2.2	26	80	6	60	42	25	8	23	1.82
2693--2726	3	12.0	3	87	12	54	32	0	0	67	0.91
4140--4187	24	2.0	24	95	0	87	47	4	4	43	1.41
5521--5564	23	2.0	21	82	8	52	13	11	0	75	1.06
5639--5669	16	1.9	16	93	0	53	45	12	3	38	1.59
6141--6189	20	2.5	20	90	6	73	48	22	8	20	1.75
7741--7873	70	1.9	71	83	4	173	26	18	21	34	1.96
9530--9691	54	3.0	54	88	0	234	33	11	27	27	1.91
10468--11436	123	8.0	122	87	3	1194	39	16	18	25	1.91
10488--11408	365	2.5	364	86	4	1230	39	16	18	25	1.91
13294--13362	2	34.5	2	100	0	138	49	0	0	50	1.00
24569--24599	15	2.1	15	100	0	62	12	12	22	51	1.74
31568--31611	22	2.0	22	95	0	79	52	4	15	27	1.63
44711--44819	16	6.8	16	72	20	59	73	0	19	6	1.10
44664--44789	50	2.6	49	77	12	118	72	0	18	8	1.15
44747--44798	24	2.2	24	82	6	61	75	1	19	3	1.06
44779--44813	16	2.2	16	95	5	63	80	0	14	5	0.89
46085--46168	37	2.3	37	89	4	125	44	17	19	19	1.88
46175--46427	51	4.9	51	96	1	443	29	15	29	26	1.96
46185--46643	55	8.6	55	91	1	482	27	17	26	27	1.98
51961--52010	23	2.1	24	88	3	75	28	12	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52613--52662	21	2.5	20	75	18	50	20	6	20	54	1.65
56823--56898	23	3.2	24	81	15	72	23	3	11	60	1.48
57024--57061	12	3.2	12	85	3	51	13	2	5	78	1.02
61182--61238	25	2.2	26	87	3	80	56	8	0	35	1.31
63022--63066	16	2.8	16	96	0	81	24	40	13	22	1.90
63097--63121	13	1.9	13	100	0	50	40	12	16	32	1.84
63194--63235	4	10.8	4	79	5	50	66	0	33	0	0.92
63194--63235	20	2.2	19	91	4	66	66	0	33	0	0.92
72043--72118	21	3.6	21	80	3	73	23	14	47	14	1.81
73501--73553	14	3.6	15	75	12	56	32	0	0	67	0.91
74247--74496	44	5.6	44	86	3	211	26	21	12	40	1.88
74275--74503	44	5.2	44	89	0	325	24	21	11	41	1.86
81119--81287	44	3.9	44	88	2	261	23	20	11	43	1.85
81261--81321	31	2.0	31	87	6	88	27	24	11	36	1.90
81110--81295	88	2.1	88	93	3	313	25	21	11	41	1.86
81835--81881	18	2.6	18	100	0	94	34	29	12	23	1.92

Tables:   1

The End!