genome.fa.s9590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009590.1 Hibiscus syriacus cultivar Beakdansim tig00116969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  297105

Tables:   1   2   

This is table  1  of  2  ( 229 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1546--1587	21	2.0	21	86	9	59	50	2	11	35	1.52
5332--5387	22	2.7	21	83	10	62	30	23	17	28	1.97
6904--6947	21	2.1	21	86	0	61	9	36	15	38	1.80
7752--7788	19	1.9	19	94	0	65	21	35	16	27	1.94
7687--7916	64	3.6	64	79	8	234	29	25	17	27	1.97
11005--11092	24	3.7	24	89	6	133	23	19	20	36	1.95
15743--15830	24	3.7	24	92	0	140	22	20	21	35	1.96
15911--16008	35	2.8	35	95	0	178	10	33	27	28	1.89
19784--19843	23	2.6	25	78	17	67	23	21	5	50	1.68
21164--21208	21	2.1	21	95	0	81	20	24	15	40	1.91
21216--21359	20	7.2	20	81	1	180	40	19	20	20	1.92
21350--21388	20	2.0	20	84	0	51	30	25	15	28	1.96
22234--22287	24	2.2	24	90	0	81	20	16	20	42	1.89
24717--24805	20	4.4	20	91	2	144	34	25	22	16	1.95
24797--24850	14	3.5	14	73	22	54	44	20	24	11	1.83
24777--24871	33	2.8	33	91	3	145	43	21	23	12	1.86
24986--25022	14	2.6	14	86	0	56	48	21	0	29	1.50
26942--27010	20	3.5	20	87	0	93	36	21	20	21	1.95
27055--27231	20	9.5	20	76	16	157	18	18	21	41	1.90
27017--27231	40	5.9	40	73	17	157	18	19	20	41	1.90
27115--27208	33	2.8	34	78	3	109	14	18	21	45	1.85
29116--29185	20	3.5	20	90	0	86	41	25	17	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29115--29228	33	3.2	33	73	17	95	43	24	18	13	1.85
29545--29610	22	3.0	22	84	0	87	22	10	36	30	1.88
29794--29843	20	2.5	20	90	0	82	24	18	28	30	1.97
29830--29963	20	6.7	20	86	1	196	22	20	19	37	1.95
29960--30000	21	2.0	21	95	0	73	41	17	24	17	1.89
33961--33994	17	2.0	17	94	0	59	17	38	0	44	1.49
36776--36809	10	3.5	10	92	4	52	17	5	0	76	0.98
42799--43186	191	2.0	193	97	2	746	34	12	20	32	1.90
43518--43610	21	4.5	21	75	4	91	39	17	24	18	1.91
43518--43610	41	2.3	41	98	0	177	39	17	24	18	1.91
43599--43692	20	4.7	20	80	7	91	32	25	17	24	1.96
43596--43673	41	1.9	41	89	0	120	38	23	15	23	1.92
43880--43921	21	2.0	21	95	0	75	21	42	16	19	1.89
44162--44205	20	2.2	20	87	0	61	11	18	20	50	1.77
45500--45544	18	2.5	18	85	0	63	26	46	15	11	1.79
46005--46070	19	3.4	19	81	4	78	37	24	22	15	1.92
46059--46114	14	3.7	14	76	17	58	50	23	16	10	1.76
46043--46135	32	2.8	33	91	3	161	46	20	19	13	1.84
46164--46267	19	5.4	19	83	4	111	14	21	24	40	1.90
46175--46248	39	1.9	38	88	2	112	14	24	22	37	1.92
48207--48269	19	3.4	18	93	4	99	44	19	22	14	1.86
48307--48363	20	2.8	20	91	0	87	19	22	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49401--49454	24	2.2	24	90	0	81	24	16	20	38	1.92
49629--49653	12	2.1	12	100	0	50	72	0	28	0	0.86
51911--52058	33	4.3	36	77	14	145	40	20	22	15	1.91
51931--52056	33	3.8	33	87	5	193	42	19	23	15	1.89
51932--52063	66	2.0	65	95	1	237	40	19	22	16	1.91
52056--52098	20	2.2	20	87	4	61	16	18	23	41	1.89
52084--52117	14	2.4	14	85	0	50	8	23	20	47	1.78
52240--52276	14	2.6	14	91	0	65	45	24	0	29	1.53
53645--53725	21	3.9	21	66	6	65	23	20	33	22	1.97
53630--53752	42	2.9	41	80	7	113	22	17	35	24	1.95
55748--55891	20	7.9	19	68	18	74	43	22	22	11	1.86
55773--55871	33	3.0	33	89	1	144	39	26	23	11	1.88
55891--55934	19	2.3	19	92	0	70	9	15	27	47	1.76
56572--56645	20	3.7	20	78	3	85	17	21	18	41	1.90
56556--56645	41	2.2	41	97	0	171	17	23	17	41	1.90
56556--56645	20	4.4	20	74	4	81	17	23	17	41	1.90
64449--64477	12	2.4	12	100	0	58	37	6	6	48	1.57
65962--66000	6	6.5	6	87	0	51	5	12	12	69	1.35
66919--66962	18	2.4	18	81	11	54	54	2	0	43	1.12
68544--68573	13	2.3	13	94	0	51	50	0	0	50	1.00
69383--69431	20	2.3	21	82	6	64	40	8	20	30	1.81
69974--70036	25	2.4	28	82	12	89	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74429--74472	14	3.3	14	75	12	56	38	4	2	54	1.33
75223--75290	2	34.0	2	100	0	136	50	0	0	50	1.00
82072--82132	30	2.1	30	85	8	83	24	22	22	29	1.99
91569--91612	22	2.0	22	90	0	70	40	15	29	13	1.86
94313--94341	15	1.9	15	100	0	58	44	0	27	27	1.54
94443--94486	21	2.1	21	86	0	61	34	25	25	15	1.95
94513--94556	22	2.0	22	86	8	63	31	34	27	6	1.83
95879--96090	91	2.2	95	84	14	278	28	13	22	35	1.92
96098--96202	23	4.6	23	81	7	124	20	27	27	23	1.99
96095--96202	44	2.4	45	92	4	173	21	26	26	25	1.99
106944--106984	20	2.1	20	86	4	57	53	4	17	24	1.63
107121--107209	36	2.4	38	75	21	98	51	4	0	43	1.21
107122--107205	35	2.6	31	72	26	75	48	4	0	46	1.23
110911--110961	22	2.3	22	93	0	84	27	19	37	15	1.92
110978--111021	23	1.9	23	100	0	88	9	25	40	25	1.84
110979--111028	23	2.2	23	92	0	82	12	24	40	24	1.88
111474--111832	172	2.1	173	89	1	560	40	5	17	37	1.72
113575--113599	6	4.2	6	100	0	50	16	0	64	20	1.30
114099--114576	8	62.9	8	73	18	344	50	6	2	40	1.43
114113--114573	37	11.7	39	85	10	520	49	6	3	40	1.44
114271--114575	23	13.6	23	66	20	96	49	6	3	40	1.46
114053--114596	209	2.7	207	89	7	800	49	6	3	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114091--114552	31	14.7	30	73	16	205	49	6	2	41	1.42
114309--114596	39	7.6	37	94	3	368	49	6	3	40	1.44
118235--118441	97	2.0	97	87	11	288	28	28	25	16	1.97
119984--120040	20	2.8	20	83	2	69	45	22	14	17	1.84
121067--121109	22	2.0	22	90	0	68	53	0	2	44	1.13
121103--121130	11	2.5	11	100	0	56	50	0	0	50	1.00
121074--121122	22	2.2	23	78	10	57	51	0	2	46	1.12
121104--121137	11	3.4	10	88	12	52	47	0	0	52	1.00
121009--121131	55	2.3	53	78	12	137	48	0	1	48	1.16
125801--125840	20	2.0	20	100	0	80	25	15	20	40	1.90
129576--129629	24	2.2	24	90	0	81	22	16	20	40	1.91
132085--132178	20	4.7	20	71	13	68	37	23	18	21	1.94
132151--132277	33	3.8	33	94	0	218	46	18	22	11	1.82
132131--132281	19	8.7	18	67	22	83	45	19	22	11	1.83
132426--132476	14	3.6	14	94	0	84	43	21	0	35	1.53
133854--133933	42	1.9	42	84	0	106	22	17	38	21	1.93
134295--134599	94	3.3	94	93	3	503	46	19	12	21	1.82
136294--136432	20	7.7	20	72	24	130	46	20	23	10	1.82
136292--136432	19	7.8	19	75	17	149	46	19	23	10	1.81
136359--136415	14	3.7	14	75	20	60	43	22	24	8	1.81
136300--136432	33	3.8	33	89	8	185	45	21	23	10	1.82
136433--136492	19	3.2	19	92	0	93	11	20	21	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136444--136565	19	6.9	19	72	18	111	12	22	20	45	1.84
136468--136563	33	2.9	33	90	1	147	12	22	21	42	1.87
137113--137186	20	3.7	20	90	1	103	22	21	17	37	1.94
137134--137312	20	8.8	20	75	9	112	29	18	20	31	1.96
137134--137324	41	4.7	41	74	8	156	29	18	20	30	1.97
137299--137351	21	2.5	22	81	6	74	33	18	26	20	1.96
144770--144798	2	14.5	2	100	0	58	51	0	0	48	1.00
147872--147916	2	23.5	2	86	8	67	48	0	0	51	1.00
149373--149402	14	2.1	15	93	6	53	76	10	6	6	1.15
149989--150074	42	2.0	43	95	4	158	43	6	31	18	1.77

Tables:   1   2