genome.fa.s9607.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009607.1 Hibiscus syriacus cultivar Beakdansim tig00116991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  270985

Tables:   1   2   

This is table  2  of  2  ( 181 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186598--186639	22	1.9	22	85	9	59	45	33	2	19	1.63
189862--189910	2	24.5	2	95	0	89	48	2	0	48	1.12
192147--192192	18	2.6	18	89	0	74	50	13	4	32	1.61
192248--192289	17	2.5	17	84	0	57	42	11	14	30	1.81
195822--195867	18	2.6	18	89	0	74	50	13	4	32	1.61
195923--195964	17	2.5	17	84	0	57	42	11	14	30	1.81
197364--197539	94	1.9	94	87	2	264	26	24	13	36	1.92
197357--197556	94	2.1	94	83	1	258	25	23	14	37	1.92
198368--198412	20	2.2	20	84	0	54	31	17	28	22	1.97
200178--200219	21	2.0	21	85	0	57	28	19	21	30	1.97
206201--206269	23	3.0	24	82	6	79	36	26	17	20	1.94
206646--206670	13	1.9	13	100	0	50	40	32	8	20	1.81
210362--210418	15	3.7	14	78	17	60	19	36	28	15	1.92
210376--210430	17	3.4	16	80	10	58	21	34	27	16	1.95
210362--210430	32	2.2	32	91	0	111	20	34	27	17	1.95
210623--210678	24	2.2	26	78	12	71	35	23	19	21	1.96
210673--210746	23	3.2	23	86	1	94	33	27	17	21	1.96
210821--211040	57	3.9	57	83	5	248	38	16	4	40	1.69
210822--211037	114	1.9	114	84	1	290	38	17	4	39	1.70
215256--215282	6	4.5	6	100	0	54	51	14	0	33	1.43
221245--221303	21	2.9	20	80	12	59	32	1	1	64	1.13
221268--221309	21	2.0	22	85	4	59	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224647--224935	142	2.0	142	100	0	578	29	18	13	38	1.88
229371--229629	132	2.0	132	90	3	414	36	25	12	25	1.91
231301--231750	229	2.0	228	92	2	751	45	7	6	39	1.59
231816--231861	20	2.3	19	89	10	74	54	10	17	17	1.70
231983--232029	20	2.4	19	82	10	67	53	10	17	19	1.72
231992--232034	20	2.3	19	88	11	63	51	11	16	20	1.75
234260--234324	21	3.1	21	80	6	69	40	15	29	15	1.88
234358--234423	33	2.0	33	90	0	105	28	0	48	22	1.51
236215--236263	19	2.6	19	93	0	80	30	2	10	57	1.43
236382--237346	198	4.9	199	98	0	1889	36	15	16	31	1.90
236382--237346	397	2.4	397	98	0	1887	36	15	16	31	1.90
238808--238896	6	14.3	6	74	6	61	37	7	34	20	1.82
238823--238900	3	26.0	3	74	0	66	35	6	34	23	1.80
238811--238892	39	2.2	39	89	6	125	35	8	35	20	1.83
238811--238896	12	6.9	12	79	7	91	36	8	34	20	1.83
238811--238900	18	4.8	18	76	8	81	35	7	34	22	1.83
240367--240891	183	2.9	183	96	0	951	35	14	16	33	1.89
241599--241631	17	2.0	17	94	5	59	51	6	12	30	1.63
241700--241736	18	2.1	18	89	0	56	32	5	10	51	1.60
241692--241738	24	2.0	24	86	0	67	34	4	14	46	1.64
241995--242081	39	2.2	39	95	0	156	48	20	13	17	1.81
242485--242548	23	2.8	23	87	0	92	35	6	20	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242485--242557	23	3.2	23	82	7	85	34	5	20	39	1.76
243619--243676	28	2.1	28	87	6	84	46	1	0	51	1.11
246767--246814	21	2.2	23	85	7	64	33	8	4	54	1.50
247721--247892	37	4.6	37	80	7	174	44	4	4	46	1.43
247791--247849	19	3.2	19	65	18	52	42	1	1	54	1.20
247792--247850	17	3.4	17	71	17	57	40	1	1	55	1.20
247986--248020	10	3.5	10	84	0	52	40	2	17	40	1.64
247986--248030	20	2.3	20	88	3	65	37	8	15	37	1.79
249338--249372	17	2.1	17	100	0	70	42	17	5	34	1.73
253210--253254	22	2.1	22	88	12	67	46	0	0	53	1.00
253244--253300	29	2.0	27	87	12	80	59	1	0	38	1.08
253501--253670	37	4.6	38	82	2	175	44	3	5	45	1.45
256833--256857	3	8.3	3	100	0	50	64	0	36	0	0.94
261351--261873	187	2.8	185	77	9	519	40	10	15	34	1.80
264565--264599	2	17.5	2	93	0	61	45	0	0	54	0.99
264582--265046	37	12.5	37	79	10	386	44	4	6	45	1.48
264847--265015	38	4.5	37	81	8	173	46	3	5	44	1.45

Tables:   1   2

The End!