genome.fa.s9616.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009616.1 Hibiscus syriacus cultivar Beakdansim tig00117002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  692457

Tables:   1   2   3   4   

This is table  4  of  4  ( 415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554708--555316	303	2.0	303	92	0	1002	34	14	15	35	1.88
555015--555485	183	2.6	183	93	0	780	34	14	15	34	1.89
554529--555485	486	2.0	486	93	0	1637	35	14	15	34	1.89
556541--556572	16	2.0	16	100	0	64	56	25	12	6	1.59
556635--556701	16	4.2	16	90	0	98	59	22	8	8	1.55
556634--556696	32	2.0	32	93	0	108	58	22	11	7	1.58
558210--558271	24	2.6	24	86	0	88	53	22	11	12	1.71
560811--560858	23	2.1	23	92	0	78	33	18	12	35	1.89
560811--560973	87	1.9	87	92	0	272	33	14	9	42	1.78
568346--568411	29	2.3	29	92	5	109	50	12	0	37	1.40
585554--585589	18	2.0	18	94	0	63	19	5	16	58	1.58
585559--585597	18	2.1	18	90	4	60	20	12	15	51	1.76
586206--586247	22	1.9	22	100	0	84	33	19	9	38	1.84
589100--589245	17	8.4	17	70	10	98	43	9	11	34	1.74
589076--589221	35	4.2	36	77	15	137	44	10	8	36	1.70
589145--589221	18	4.4	18	78	4	77	46	10	10	32	1.72
589086--589221	69	2.0	69	82	5	168	45	11	8	35	1.69
598824--598857	17	2.0	17	88	0	50	52	0	0	47	1.00
606948--607007	30	2.0	30	100	0	120	56	3	10	30	1.48
615470--615533	3	22.0	3	93	6	114	67	0	0	32	0.91
615474--615535	20	3.1	20	93	6	108	69	0	0	30	0.89
623559--624019	7	68.7	7	88	10	716	42	14	27	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627360--627409	20	2.5	20	96	0	91	42	30	6	22	1.77
628010--628043	16	2.0	18	88	11	54	58	0	29	11	1.33
629427--629469	18	2.4	17	81	11	50	69	2	2	25	1.12
633898--633941	15	2.9	15	86	3	61	50	0	0	50	1.00
639668--639711	2	22.5	2	90	4	72	45	0	2	52	1.13
639939--639985	21	2.2	21	84	0	67	19	27	17	36	1.93
639993--640044	20	2.6	20	81	6	61	26	19	19	34	1.95
643485--643665	33	5.3	33	78	9	200	44	18	22	14	1.86
643498--643669	19	9.7	19	69	20	104	44	19	22	13	1.85
643485--643665	73	2.6	66	79	10	200	44	18	22	14	1.86
643685--643766	19	4.6	19	75	17	86	12	21	21	43	1.85
643873--643911	14	2.8	13	88	11	60	46	17	0	35	1.49
647174--647251	33	2.4	33	93	0	129	44	21	21	11	1.84
647125--647234	20	5.9	19	76	14	95	44	20	21	12	1.85
647247--647291	19	2.4	19	88	0	63	11	13	26	48	1.75
647296--647368	20	3.6	20	85	7	103	13	16	17	52	1.75
647786--647851	27	2.4	27	97	0	123	18	1	30	50	1.56
647953--648166	20	10.6	20	77	6	225	19	18	24	37	1.94
647955--648166	41	5.2	41	90	1	329	19	18	24	37	1.94
648261--648310	20	2.5	20	77	6	57	16	18	32	34	1.92
653836--653868	16	2.1	16	88	5	50	60	6	6	27	1.44
653848--653905	27	2.1	27	81	12	66	44	18	10	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656973--657030	26	2.2	27	78	9	66	41	29	0	29	1.56
657623--657662	20	2.0	20	85	0	53	67	7	2	22	1.28
668591--668635	23	1.9	24	90	4	74	20	6	4	68	1.29
672112--672145	16	2.1	17	89	10	54	11	26	2	58	1.47
675796--675823	11	2.5	11	100	0	56	82	0	17	0	0.68
675670--675813	74	1.9	74	84	5	193	56	9	21	13	1.64
676637--676853	120	1.8	120	83	7	289	32	24	19	23	1.98
676930--677188	106	2.5	104	91	3	396	34	25	17	22	1.96
679054--679078	2	12.5	2	100	0	50	52	0	0	48	1.00
686227--686339	35	3.2	34	86	5	154	42	22	0	34	1.60
687349--687460	35	3.2	34	85	7	145	36	0	20	41	1.59

Tables:   1   2   3   4

The End!