genome.fa.s9620.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009620.1 Hibiscus syriacus cultivar Beakdansim tig00117009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1051670

Tables:   1   2   3   4   

This is table  4  of  4  ( 465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717993--718057	14	4.6	14	84	7	87	24	21	29	24	1.99
717991--718064	29	2.6	29	91	2	114	24	21	32	21	1.98
722547--722587	7	5.9	7	91	0	55	31	21	26	19	1.97
722593--722683	14	6.4	14	79	9	85	19	26	32	20	1.97
732598--732640	22	2.0	22	86	9	61	55	4	2	37	1.33
732729--732774	18	2.7	18	77	9	53	58	4	0	36	1.18
732747--732828	26	3.2	24	73	20	69	57	2	1	39	1.20
756463--756607	61	2.3	62	83	5	184	29	16	26	26	1.97
757080--757113	16	2.2	15	89	5	50	47	0	0	52	1.00
764664--764728	6	10.8	6	98	0	121	33	13	16	35	1.89
766821--767184	131	2.8	131	87	4	511	33	10	16	39	1.83
783307--783331	13	1.9	13	100	0	50	40	12	8	40	1.72
785336--785375	18	2.2	18	90	0	62	27	0	10	62	1.27
787398--787447	24	2.1	24	85	7	66	60	16	2	22	1.46
790755--790805	20	2.5	20	100	0	102	70	0	17	11	1.16
797656--797705	24	2.1	24	85	7	66	60	16	2	22	1.46
807715--808059	182	1.9	185	95	4	628	36	13	14	35	1.85
809105--809148	19	2.3	19	96	0	79	59	18	0	22	1.38
821832--821936	36	2.9	36	92	1	183	47	18	18	16	1.83
823344--823388	17	2.6	18	74	22	51	40	0	4	55	1.20
825268--825300	2	16.5	2	100	0	66	51	0	0	48	1.00
833403--833471	24	2.8	24	82	10	70	46	1	1	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833541--833573	17	1.9	17	93	0	57	33	0	0	66	0.92
836420--836543	63	2.0	63	84	4	162	45	10	8	34	1.70
854774--854814	14	2.9	14	88	3	64	34	4	19	41	1.73
855092--855125	17	2.0	17	88	0	50	44	0	2	52	1.16
855061--855164	23	4.6	23	70	16	74	48	2	0	48	1.23
855554--855640	30	2.9	30	82	1	113	32	13	10	43	1.78
855554--855640	29	2.9	30	83	5	106	32	13	10	43	1.78
856258--856359	51	2.0	50	88	1	150	24	22	22	30	1.99
856408--856437	15	2.0	15	100	0	60	13	46	0	40	1.43
856409--856446	15	2.5	15	91	0	58	13	42	0	44	1.43
859668--859754	32	2.6	33	84	13	108	63	13	1	21	1.37
863499--863541	19	2.3	19	100	0	86	37	0	23	39	1.55
864718--864777	30	2.0	30	87	9	86	45	0	3	51	1.17
875512--875548	19	1.9	19	94	0	65	13	21	43	21	1.87
875511--875700	76	2.5	76	89	4	280	20	22	33	23	1.97
876304--876345	17	2.5	16	84	7	57	57	28	0	14	1.38
878388--878448	20	2.9	21	87	7	79	18	26	34	21	1.96
880786--880853	34	2.0	34	97	0	127	26	8	33	30	1.87
883976--884180	75	2.7	76	89	2	290	20	23	32	23	1.98
893761--893806	20	2.3	20	85	7	58	21	26	21	30	1.99
893775--893827	20	2.7	19	85	5	70	22	26	20	30	1.98
893993--894042	18	2.6	19	84	6	66	28	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906181--906218	20	1.9	20	88	0	58	34	0	15	50	1.45
906288--906361	19	3.8	19	76	13	69	36	9	14	39	1.79
906454--906511	19	3.0	19	82	2	71	32	18	12	36	1.88
906465--906530	20	3.4	19	81	6	69	34	18	10	36	1.85
917082--917133	20	3.0	17	81	13	54	63	0	15	21	1.31
921380--921438	29	2.0	29	96	0	109	49	11	13	25	1.76
926064--926122	29	2.0	29	96	0	109	50	13	11	23	1.74
935246--935722	81	5.9	81	90	2	760	32	21	10	36	1.87
938929--939001	26	2.8	26	80	2	83	50	12	10	26	1.72
940269--940391	32	3.8	33	79	3	117	25	27	22	24	2.00
943843--943889	23	2.0	23	91	0	76	51	10	4	34	1.56
949454--949686	54	4.3	53	88	1	322	32	21	17	27	1.96
949454--949680	108	2.1	108	90	1	357	33	22	16	27	1.96
960009--960033	12	2.1	12	100	0	50	20	16	24	40	1.91
963626--963923	149	2.0	149	100	0	596	30	14	23	30	1.95
964784--964808	12	2.1	12	100	0	50	20	16	24	40	1.91
970723--970830	2	55.0	2	96	3	202	50	0	0	49	1.00
971119--971206	24	3.7	23	72	6	68	37	17	21	23	1.94
971202--971292	24	3.8	23	75	12	78	34	19	27	18	1.96
972567--972619	20	2.7	20	82	5	63	35	0	24	39	1.56
973992--974159	45	3.8	45	79	10	195	29	12	22	35	1.91
975158--975196	15	2.5	16	83	8	53	58	0	7	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983091--983162	17	4.8	15	84	8	71	12	22	44	20	1.85
983092--983140	13	3.8	13	91	2	82	12	22	46	18	1.82
990326--990397	17	4.8	15	84	8	71	12	22	44	20	1.85
990327--990375	13	3.8	13	91	2	82	12	22	46	18	1.82
992875--992955	43	1.9	43	94	2	146	39	22	9	28	1.86
995813--995876	30	2.1	30	88	5	94	67	1	4	26	1.19
997056--997084	3	9.7	3	100	0	58	65	0	0	34	0.93
997858--997945	3	29.7	3	95	2	160	64	0	1	34	1.01
999482--999551	16	4.4	16	87	0	95	38	20	24	17	1.93
999488--999549	9	7.6	9	69	20	55	37	20	24	17	1.94
1004851--1004917	5	13.4	5	98	0	107	44	19	14	20	1.86
1004854--1004928	5	15.0	5	95	0	60	46	20	12	21	1.82
1006431--1006472	18	2.4	17	80	11	50	14	23	11	50	1.76
1012913--1012956	19	2.2	20	80	4	54	27	13	0	59	1.35
1014673--1014953	117	2.4	117	86	3	388	39	22	13	25	1.90
1015044--1015100	26	2.2	26	87	0	78	26	19	15	38	1.92
1016331--1016378	20	2.5	20	86	10	64	41	22	0	35	1.54
1017526--1017587	27	2.2	28	85	8	81	27	19	6	46	1.74
1029759--1029790	15	2.1	15	94	0	55	78	0	9	12	0.97
1029950--1029982	2	16.5	2	100	0	66	51	0	0	48	1.00
1031400--1031606	110	1.9	110	86	2	299	24	18	21	35	1.95
1032618--1032659	18	2.4	17	84	4	57	7	9	4	78	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043050--1043112	29	2.2	29	82	5	74	68	1	12	17	1.29
1043241--1043272	15	2.1	15	94	0	55	78	0	9	12	0.97
1043275--1043338	16	4.1	17	73	17	59	64	1	1	32	1.13
1043314--1043370	19	2.9	19	71	7	51	61	0	7	31	1.23
1045175--1045213	17	2.3	17	90	0	60	64	0	0	35	0.94
1045185--1045220	17	2.1	17	94	0	63	61	0	0	38	0.96
1045589--1046339	171	4.4	169	77	6	640	31	19	11	37	1.88
1045581--1046768	341	3.5	341	75	8	979	30	19	12	37	1.89
1046208--1046768	173	3.3	172	78	6	494	29	20	13	36	1.91
1046667--1046872	110	1.9	110	91	0	340	23	19	19	37	1.94
1047083--1047306	120	1.9	120	82	5	283	24	19	13	42	1.87
1047322--1048226	172	5.3	171	77	7	822	29	20	13	36	1.91
1047322--1048079	343	2.2	338	81	4	844	29	20	13	36	1.91
1047322--1048226	344	2.6	344	78	8	927	29	20	13	36	1.91
1048220--1049391	172	6.8	171	76	6	965	30	20	12	36	1.90
1048246--1049402	343	3.4	339	79	6	1066	29	20	12	36	1.90
1049501--1050169	171	3.9	170	74	9	439	30	20	12	36	1.90

Tables:   1   2   3   4

The End!