genome.fa.s9622.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009622.1 Hibiscus syriacus cultivar Beakdansim tig00117011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  790348

Tables:   1   2   3   4   

This is table  4  of  4  ( 439 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673105--673484	94	4.1	94	94	1	629	47	18	11	21	1.80
675169--675231	20	3.2	20	82	8	83	46	17	23	12	1.83
675167--675288	33	3.5	33	80	7	127	47	18	22	11	1.80
675313--675376	21	3.1	21	80	6	78	9	21	17	51	1.73
675320--675391	20	3.6	19	79	5	72	12	18	18	51	1.76
675952--676103	20	7.6	20	78	4	171	18	19	25	36	1.95
675954--676103	40	3.7	40	91	0	246	18	19	25	36	1.94
675951--676144	60	3.2	61	78	7	193	18	19	25	36	1.94
675949--676126	40	4.4	40	83	6	209	20	19	25	35	1.95
676460--676597	60	2.3	60	86	3	179	35	21	17	25	1.95
676465--676551	20	4.3	20	65	13	61	33	22	18	25	1.97
676562--676605	20	2.2	20	91	0	70	40	15	18	25	1.90
676727--676774	22	2.2	22	88	0	69	29	41	6	22	1.78
677725--677763	17	2.2	18	86	13	55	58	5	0	35	1.20
679600--679639	6	6.7	6	88	0	53	30	0	52	17	1.45
684277--684311	2	17.0	2	94	5	61	48	0	2	48	1.16
684524--684553	15	2.1	14	93	6	51	16	0	0	83	0.65
685623--685652	14	2.1	14	93	0	51	50	6	0	43	1.28
685709--685755	23	2.0	23	87	0	67	31	17	19	31	1.94
686020--686077	2	29.0	2	100	0	116	50	0	0	50	1.00
687124--687162	17	2.4	17	95	4	71	51	5	0	43	1.24
699185--699214	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699389--699432	20	2.2	20	88	4	63	38	9	13	38	1.77
700832--700873	18	2.4	18	84	4	50	66	2	28	2	1.16
700845--700889	15	2.8	16	90	10	65	68	0	26	4	1.08
705266--705319	20	2.7	20	77	5	56	37	11	11	40	1.76
705606--705646	21	2.0	21	90	0	64	41	21	9	26	1.84
707181--707246	18	3.4	18	74	25	71	15	3	24	57	1.52
707813--707864	20	2.6	20	90	0	77	30	13	19	36	1.90
707884--707933	19	2.6	19	100	0	100	38	14	18	30	1.89
707986--708030	20	2.2	21	80	8	56	24	15	13	46	1.82
709929--709981	23	2.4	22	72	9	54	43	0	16	39	1.49
711225--711302	31	2.5	31	87	0	111	38	14	21	25	1.91
713123--713188	31	2.1	31	91	0	105	36	12	27	24	1.91
720667--720719	21	2.5	21	87	0	79	20	24	20	33	1.97
720709--720775	20	3.3	20	100	0	134	38	16	19	25	1.92
720768--720897	20	6.5	20	88	3	172	29	26	17	26	1.98
720709--720784	40	1.9	40	94	0	134	38	15	19	26	1.92
720748--720875	60	2.1	60	81	5	143	31	23	17	27	1.97
721715--721768	24	2.2	24	93	0	90	20	18	20	40	1.91
724118--724400	140	2.0	140	97	0	539	28	14	15	42	1.85
724371--724553	20	9.8	20	76	14	167	34	21	16	26	1.95
724379--724535	54	2.9	54	92	0	260	35	24	17	23	1.95
724371--724575	20	10.9	20	73	12	137	33	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724371--724575	40	5.4	40	75	13	164	33	20	18	27	1.96
724655--724716	14	4.3	14	77	6	61	46	12	0	40	1.42
726141--726190	21	2.4	21	79	0	55	18	16	42	24	1.89
726707--726773	20	3.5	18	82	11	80	35	25	19	19	1.95
726718--726773	20	2.8	20	88	0	85	35	23	19	21	1.96
726816--726859	20	2.2	20	91	0	70	18	20	25	36	1.95
727197--727249	21	2.5	21	84	0	70	30	30	15	24	1.95
728776--728848	20	3.7	20	80	10	87	42	24	17	15	1.88
728773--728859	19	4.4	20	81	9	81	44	24	16	14	1.85
729240--729297	22	2.6	22	77	0	71	20	20	39	18	1.92
729460--729535	20	3.8	20	83	0	98	28	21	22	27	1.99
729460--729613	40	3.8	40	72	9	116	31	20	21	26	1.98
729551--729605	21	2.6	21	79	2	65	40	18	23	18	1.91
735956--736005	27	1.9	25	91	4	73	36	12	18	34	1.87
737062--737103	20	2.0	22	90	9	70	57	4	0	38	1.20
746119--746153	17	1.9	19	88	11	56	20	2	37	40	1.67
746239--746278	15	2.7	15	85	11	55	55	0	0	45	0.99
749081--749546	231	2.0	233	98	1	900	33	17	8	40	1.80
752804--752849	23	2.0	23	87	8	67	63	4	0	32	1.14
752884--752910	10	2.7	10	100	0	54	37	0	40	22	1.54
758116--758174	21	2.8	21	72	10	57	27	0	27	45	1.54
759362--759390	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759424--759493	28	2.4	28	83	9	77	31	2	4	61	1.30
759595--759627	2	16.5	2	100	0	66	48	0	0	51	1.00
770857--771456	106	6.1	94	88	6	797	33	25	18	22	1.96
771143--771491	106	3.3	106	91	1	583	32	24	18	23	1.97
773053--773101	2	24.5	2	100	0	98	48	0	0	51	1.00
773135--773204	28	2.4	28	83	9	77	31	2	4	61	1.30
773304--773336	17	1.9	17	88	11	50	36	0	3	60	1.12
779676--779721	25	1.9	25	82	8	60	63	0	0	36	0.95
779685--779724	20	2.1	19	85	4	53	65	0	0	35	0.93
780766--780869	33	3.2	33	93	1	165	45	15	7	31	1.74
783745--783800	23	2.3	23	87	6	76	50	0	0	50	1.00
783747--783800	12	4.5	12	76	6	56	48	0	0	51	1.00
783747--783817	23	3.0	24	84	8	67	47	0	0	52	1.00

Tables:   1   2   3   4

The End!