Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009625.1 Hibiscus syriacus cultivar Beakdansim tig00117017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6938204

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2922 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6840791--6840897
24
4.5
24
80
0
97
24
7
15
52
1.69
6843136--6843204
34
2.0
34
100
0
138
50
14
11
23
1.75
6844386--6844422
11
3.2
12
85
7
51
35
16
2
45
1.61
6848423--6848550
59
2.2
59
84
0
166
29
23
18
28
1.98
6856361--6856420
27
2.2
27
93
0
102
21
11
26
40
1.88
6860153--6860199
21
2.3
21
82
14
62
48
2
4
44
1.34
6860189--6860241
22
2.3
23
81
12
65
52
3
0
43
1.19
6860213--6860277
18
3.4
18
81
10
60
47
4
0
47
1.22
6860213--6860259
18
2.4
20
86
10
62
46
6
0
46
1.28
6860282--6860340
23
2.6
23
86
5
75
47
5
0
47
1.24
6860233--6860294
2
31.5
2
79
9
65
50
3
0
46
1.17
6861091--6861301
43
4.9
43
70
12
135
25
19
20
34
1.97
6861026--6861425
131
3.0
131
77
6
396
25
19
22
32
1.97
6861901--6861959
28
2.1
28
100
0
118
44
16
0
38
1.48
6875488--6875515
2
14.0
2
100
0
56
50
0
0
50
1.00
6875966--6875991
12
2.2
12
100
0
52
42
23
7
26
1.81
6883232--6883279
23
2.1
23
88
7
71
18
37
18
25
1.94
6883295--6883328
17
2.0
17
88
0
50
47
17
2
32
1.63
6884478--6884516
15
2.6
15
100
0
78
23
7
10
58
1.56
6884980--6885025
18
2.6
18
92
0
74
21
21
30
26
1.99
6886281--6886318
19
2.0
20
89
5
60
44
13
13
28
1.81
6894569--6894618
14
3.6
14
74
12
50
80
6
0
14
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6894532--6894623
35
2.7
35
81
9
93
75
7
1
16
1.09
6894714--6894767
22
2.6
20
78
16
56
57
12
7
22
1.60
6895787--6895829
21
2.0
21
86
0
59
11
4
48
34
1.60
6896870--6896914
22
2.0
22
83
8
56
44
13
6
35
1.70
6899149--6899336
94
2.0
94
100
0
376
37
12
22
27
1.91
6899904--6899971
33
2.1
33
100
0
136
50
11
8
29
1.69
6908253--6908304
26
2.0
25
85
10
70
28
19
1
50
1.58
6909106--6909163
21
2.8
20
73
17
55
72
10
0
17
1.11
6909132--6909185
12
4.7
11
76
15
56
75
9
1
12
1.11
6909109--6909170
22
3.0
21
77
13
65
74
8
0
17
1.06
6911006--6911095
42
2.2
41
84
6
110
32
21
22
24
1.98
6911270--6911356
41
2.1
42
82
6
106
29
21
19
28
1.98
6913311--6913378
8
7.7
9
79
12
70
1
19
1
77
0.92
6913311--6913378
27
2.6
27
84
9
88
1
19
1
77
0.92
6913359--6913415
25
2.5
22
78
15
62
7
17
0
75
1.02
6913373--6913427
25
2.2
24
90
6
83
10
12
1
74
1.15
6917138--6917211
28
2.7
29
79
8
82
77
8
2
12
1.09
6918077--6918200
65
1.9
65
90
6
198
16
10
42
29
1.82
6921417--6921470
22
2.6
20
78
16
56
57
12
7
22
1.60
6936581--6936663
40
2.1
40
84
4
105
34
14
22
27
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!