genome.fa.s9632.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009632.1 Hibiscus syriacus cultivar Beakdansim tig00117028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  343994

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207728--207803	25	3.0	25	92	1	125	30	23	26	19	1.98
212646--212690	23	2.0	23	81	0	54	26	24	26	22	2.00
212805--212873	25	2.8	25	100	0	138	27	26	28	17	1.97
214541--214585	21	2.1	21	87	0	63	15	24	28	31	1.96
221020--221048	12	2.3	13	94	5	51	68	0	0	31	0.89
223135--223187	20	2.7	19	82	8	61	45	1	0	52	1.11
223205--223238	18	2.0	18	88	11	54	58	0	5	35	1.22
228361--228400	22	1.9	20	90	10	62	45	2	0	52	1.14
229548--229596	18	2.7	18	77	0	53	26	12	0	61	1.31
233568--233599	9	3.8	9	84	16	50	34	21	9	34	1.86
241578--242212	105	6.0	105	95	0	1126	33	25	18	22	1.97
241577--242208	211	3.0	211	96	0	1167	33	25	18	22	1.97
241578--242212	316	2.0	316	96	1	1166	33	25	18	22	1.97
242270--242311	20	2.1	20	86	0	57	23	19	19	38	1.93
242529--242568	22	1.9	20	90	10	62	45	2	0	52	1.14
244115--244165	19	2.8	19	82	5	61	29	3	1	64	1.22
244100--244157	25	2.3	25	82	11	73	24	6	3	65	1.33
247850--247916	23	3.0	21	79	16	66	47	4	0	47	1.22
247885--247931	22	2.1	22	88	4	67	44	2	0	53	1.12
247879--247958	32	2.5	32	80	14	92	47	2	0	50	1.14
247921--247971	23	2.2	23	89	6	77	52	3	0	43	1.19
248034--248094	27	2.3	26	83	11	70	52	0	1	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250353--250395	16	2.8	16	86	10	63	67	4	2	25	1.22
250371--250410	18	2.2	18	86	8	55	70	5	2	22	1.19
250437--250515	13	5.7	13	72	20	54	64	1	2	31	1.15
250471--250536	3	22.0	3	73	17	57	66	0	4	28	1.11
250451--250515	29	2.1	32	86	8	91	66	1	1	30	1.10
250451--250607	34	4.8	32	69	18	92	66	0	7	26	1.21
250813--250851	2	20.0	2	84	5	53	51	0	0	48	1.00
254012--254060	7	6.7	7	86	4	62	0	16	4	79	0.88
254024--254065	22	1.9	22	85	9	59	2	14	4	78	1.01
264491--264550	30	1.9	32	87	12	90	65	1	1	31	1.13
264537--264605	24	2.8	24	81	14	79	68	1	8	21	1.25
267473--267503	5	6.2	5	96	0	53	45	0	0	54	0.99
268666--268690	2	12.5	2	100	0	50	0	52	0	48	1.00
271054--271109	23	2.4	23	90	3	85	21	30	10	37	1.87
275986--276029	3	14.7	3	85	0	61	2	27	0	70	0.99
285553--285618	30	2.2	30	86	0	87	10	30	25	33	1.90
286979--287029	26	2.0	27	81	11	63	54	7	0	37	1.29
287014--287056	19	2.3	19	87	0	59	55	11	0	32	1.36
289430--289462	17	2.0	17	88	5	50	39	0	0	60	0.97
289646--289682	18	2.1	18	89	0	56	21	29	27	21	1.99
297947--297985	14	2.6	16	80	19	57	53	0	0	46	1.00
306782--306809	13	2.2	13	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307332--307360	12	2.3	13	94	5	51	68	0	0	31	0.89
309649--309748	44	2.2	44	84	7	121	26	16	23	35	1.95
309354--309833	170	2.8	169	97	0	906	24	16	25	33	1.96
310702--310728	10	2.7	10	100	0	54	0	11	7	81	0.87
317424--317503	39	2.1	39	88	4	117	21	21	26	31	1.98
320933--320961	12	2.3	13	94	5	51	68	0	0	31	0.89
326163--326188	3	8.7	3	100	0	52	69	0	0	30	0.89
326455--326540	44	2.0	44	85	0	118	23	12	24	39	1.89
327081--327110	16	1.9	15	93	6	51	53	0	0	46	1.00
327328--327380	19	2.7	19	91	2	79	37	9	26	26	1.87
329901--329926	6	4.3	6	100	0	52	50	0	0	50	1.00
332129--332384	95	2.7	94	84	3	327	33	18	16	31	1.93
333497--334005	84	6.2	84	77	5	452	30	23	20	25	1.99
333620--334017	164	2.4	165	85	0	530	30	23	20	24	1.99
334048--334310	36	7.4	36	76	11	240	26	20	12	40	1.88
334181--334310	37	3.6	36	85	3	188	24	20	15	40	1.91
334363--334493	37	3.6	36	89	4	199	45	18	7	29	1.77
338503--338553	19	2.7	19	96	0	93	25	29	21	23	1.99
338644--338736	21	4.6	20	75	4	87	39	18	23	18	1.92
338641--338736	41	2.3	41	94	0	174	40	17	22	18	1.91
338644--338736	20	4.6	20	75	4	87	39	18	23	18	1.92
338663--338797	41	3.3	41	80	6	114	38	20	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338725--338819	20	4.7	20	80	2	91	34	24	17	23	1.96
339006--339049	22	2.0	22	95	0	79	20	45	15	18	1.85
339310--339347	20	1.9	20	88	0	58	13	15	21	50	1.78
340653--340697	18	2.5	18	85	0	63	26	42	15	15	1.87
341106--341151	12	3.7	13	75	18	53	45	21	21	10	1.82
341118--341153	12	3.1	12	84	8	56	41	19	25	13	1.88
341101--341153	23	2.2	25	90	10	83	45	18	22	13	1.84
341298--341334	14	2.6	14	91	0	65	45	24	0	29	1.53
342679--342745	21	3.2	21	68	4	55	19	20	35	23	1.95
342718--342795	40	2.0	40	84	0	102	21	17	39	20	1.92

Tables:   1   2

The End!