genome.fa.s9635.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009635.1 Hibiscus syriacus cultivar Beakdansim tig00117038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1009897

Tables:   1   2   3   4   

This is table  4  of  4  ( 428 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809452--809627	90	2.0	90	93	2	300	44	6	11	37	1.66
816133--816309	89	2.0	90	91	3	286	44	5	11	38	1.64
818177--818338	79	2.1	79	100	0	324	19	12	7	59	1.57
821576--821617	2	22.0	2	85	9	61	52	0	2	45	1.13
821576--821619	17	2.6	17	89	3	72	52	0	4	43	1.22
821689--821715	2	13.5	2	100	0	54	51	0	0	48	1.00
827707--827744	18	2.1	19	90	5	60	44	10	13	31	1.77
829806--829877	6	12.2	6	74	11	60	79	0	18	2	0.86
829808--829877	28	2.5	28	83	2	77	80	0	17	2	0.84
829808--829892	14	5.8	14	71	10	55	78	1	17	2	0.91
831293--831619	45	7.3	45	77	10	224	20	15	20	44	1.87
831275--831652	90	4.2	90	81	3	388	20	15	20	43	1.88
831275--831619	135	2.6	134	83	5	401	20	15	20	44	1.87
832355--833219	131	6.6	130	73	7	497	33	17	17	30	1.94
832355--833085	260	2.8	259	83	3	864	33	17	17	30	1.94
833422--833471	3	16.7	3	84	15	68	32	0	0	68	0.90
833422--833467	23	2.0	24	95	4	85	32	0	0	67	0.91
834243--834280	19	2.0	19	94	0	67	44	5	13	36	1.66
834747--835044	111	2.7	110	83	5	365	36	22	13	27	1.91
834747--835056	54	5.7	54	82	5	356	37	21	12	28	1.91
840387--840725	54	6.3	54	84	4	391	36	20	15	28	1.92
841335--841591	78	3.3	76	83	5	268	36	14	19	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
859719--859764	21	2.2	21	92	0	74	15	34	17	32	1.91
860219--860264	21	2.2	21	92	0	74	26	26	32	15	1.95
863050--863095	19	2.4	19	88	0	65	28	2	0	69	1.00
863059--863096	9	4.2	9	83	9	51	23	0	0	76	0.79
864467--864504	20	1.9	20	94	0	67	36	18	23	21	1.95
868331--868415	32	2.8	33	79	12	92	36	8	11	43	1.71
868506--868603	28	3.4	28	76	9	79	41	7	11	39	1.68
888799--888865	27	2.4	27	73	14	64	13	23	2	59	1.48
899321--899377	30	1.9	30	85	7	80	56	10	0	33	1.34
899415--899449	17	2.1	17	88	0	52	62	0	2	34	1.10
905830--905911	40	2.0	40	97	0	155	21	18	26	32	1.97
906016--906127	47	2.5	44	83	4	125	39	8	20	31	1.83
912996--913077	40	2.0	40	97	0	155	21	18	26	32	1.97
931478--931616	45	3.1	44	82	4	170	41	20	12	26	1.87
939486--939582	29	3.3	30	78	4	90	44	21	6	27	1.76
939584--939618	18	2.0	17	94	5	61	11	22	48	17	1.79
944342--944456	40	2.9	40	87	3	162	30	30	18	20	1.96
944619--944671	24	2.3	24	77	6	56	45	9	9	35	1.69
945807--946535	377	1.9	378	95	3	1337	36	20	7	35	1.81
949255--949297	15	2.8	16	80	16	54	55	4	6	32	1.47
952192--952263	13	5.5	13	73	23	62	4	13	2	79	1.00
959641--959686	22	2.1	22	95	0	83	36	21	8	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961587--961625	15	2.4	17	87	12	55	46	5	2	46	1.38
962617--962648	12	2.7	12	95	0	55	25	0	34	40	1.56
962836--962902	30	2.3	30	84	7	84	38	5	19	35	1.76
963684--963921	40	5.9	40	93	2	397	23	17	28	30	1.97
967586--967637	23	2.4	20	81	15	59	15	19	0	65	1.27
967624--967655	16	2.0	16	93	0	55	15	9	0	75	1.05
978682--978820	45	3.1	45	88	4	210	41	19	10	28	1.85
988048--988207	44	3.6	45	85	2	216	31	21	8	37	1.84
988311--988472	40	4.1	40	91	0	261	33	25	16	24	1.96
992327--992451	6	19.8	6	73	19	78	5	16	2	76	1.09
992381--992453	13	5.7	13	81	14	57	0	16	4	79	0.88
992396--992453	23	2.6	23	84	13	84	0	15	1	82	0.74
992364--992451	29	2.7	34	80	18	98	2	15	3	78	0.99
992372--992452	28	2.8	29	83	10	94	1	16	3	79	0.95
995250--995406	44	3.5	45	85	6	205	33	22	7	37	1.81
995511--995592	40	2.0	40	95	0	146	32	21	17	28	1.96
1001210--1001282	29	2.6	28	82	4	85	42	1	2	53	1.23
1001408--1001490	30	2.9	27	79	11	85	53	7	1	38	1.37
1001517--1001551	17	2.1	17	88	0	52	62	0	2	34	1.10
1002310--1002341	3	11.0	3	93	6	57	34	0	0	65	0.93
1002310--1002337	14	2.0	14	100	0	56	35	0	0	64	0.94
1002310--1002344	17	2.1	16	94	5	61	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004069--1004096	14	2.0	14	100	0	56	35	7	28	28	1.84
1006308--1006382	38	2.0	37	82	10	91	48	4	2	45	1.35

Tables:   1   2   3   4

The End!